SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

PMP inhibitors superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the PMP inhibitors superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040110 29 2005-09-08 d1kj0a_ PMP inhibitors
0038147 30 2005-09-08 d1gl0i_ PMP inhibitors
0047007 68 2008-09-10 d1gl1i_ PMP inhibitors
0040106 31 2005-09-08 d1kioa_ PMP inhibitors
0044997 30 2005-09-08 d1wo9a_ PMP inhibitors
0040075 31 2005-09-08 d1kgma_ PMP inhibitors