SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Defensin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 20 SUPERFAMILY models representing the Defensin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036291 3 2005-09-08 d1d6ba_ Defensin
0044513 12 2005-09-08 d1ut3a_ Defensin
0035197 17 2005-09-08 d1atxa_ Defensin
0036767 43 2005-09-08 d1e4sa_ Defensin
0046326 27 2008-09-10 d1dfna_ Defensin
0035631 47 2005-09-08 d1bnba_ Defensin
0043609 17 2005-09-08 d1sh1a_ Defensin
0035155 17 2005-09-08 d1apfa_ Defensin
0037233 2 2005-09-08 d1ewsa_ Defensin
0049707 71 2008-09-10 d1tv0a_ Defensin
0036766 35 2005-09-08 d1e4ra_ Defensin
0045936 4 2008-09-10 d1bdsa_ Defensin
0035411 4 2005-09-08 d1b8wa_ Defensin
0040113 54 2005-09-08 d1kj6a_ Defensin
0035053 17 2005-09-08 d1ahla_ Defensin
0036768 36 2005-09-08 d1e4ta_ Defensin
0046756 24 2008-09-10 d1fd3a_ Defensin
0038424 6 2005-09-08 d1h5oa_ Myotoxin
0054922 4 2010-05-31 d3d4ub1 Tick carboxypeptidase inhibitor-like
0054923 4 2010-05-31 d3d4ub2 Tick carboxypeptidase inhibitor-like