SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

FnI-like domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the FnI-like domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042760 270 2005-09-08 d1qgba2 Fibronectin type I module
0037480 75 2005-09-08 d1fbra1 Fibronectin type I module
0046485 941 2008-09-10 d1e88a3 Fibronectin type I module
0042759 270 2005-09-08 d1qgba1 Fibronectin type I module
0052163 1062 2008-09-10 d2cg7a1 Fibronectin type I module
0044081 52 2005-09-08 d1tpga2 Fibronectin type I module
0037481 266 2005-09-08 d1fbra2 Fibronectin type I module
0049793 2787 2008-09-10 d1u5ma_ VWC domain