SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

GLA-domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 9 SUPERFAMILY models representing the GLA-domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048382 404 2008-09-10 d1nl0g_ GLA-domain
0042600 40 2005-09-08 d1q3ma_ GLA-domain
0040622 151 2005-09-08 d1lqvc_ GLA-domain
0047402 404 2008-09-10 d1iodg_ GLA-domain
0042296 152 2005-09-08 d1pfxl3 GLA-domain
0036323 152 2005-09-08 d1danl3 GLA-domain
0048383 407 2008-09-10 d1nl1a2 GLA-domain
0042658 48 2005-09-08 d1q8ha_ GLA-domain
0042111 152 2005-09-08 d1p0sl2 GLA-domain