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  Home > SCOP hierarchy > Glucocorticoid receptor-like (DNA-binding domain) > Hidden Markov models

Glucocorticoid receptor-like (DNA-binding domain) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 109 SUPERFAMILY models representing the Glucocorticoid receptor-like (DNA-binding domain) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045592 466 2005-09-08 d4gata_ Erythroid transcription factor GATA-1
0038173 441 2005-09-08 d1gnfa_ Erythroid transcription factor GATA-1
0045290 465 2005-09-08 d2gata_ Erythroid transcription factor GATA-1
0043073 1382 2005-09-08 d1r0oa_ Nuclear receptor
0040440 1375 2005-09-08 d1lata_ Nuclear receptor
0036002 1385 2005-09-08 d1cita_ Nuclear receptor
0045386 1039 2005-09-08 d2nllb_ Nuclear receptor
0038687 1383 2005-09-08 d1hraa_ Nuclear receptor
0043072 1079 2005-09-08 d1r0nb_ Nuclear receptor
0038158 1383 2005-09-08 d1glua_ Nuclear receptor
0040006 1029 2005-09-08 d1kb4b_ Nuclear receptor
0043116 1334 2005-09-08 d1r4ia_ Nuclear receptor
0034917 1383 2005-09-08 d1a6ya_ Nuclear receptor
0036583 1385 2005-09-08 d1dszb_ Nuclear receptor
0038533 1378 2005-09-08 d1hcqa_ Nuclear receptor
0040589 1385 2005-09-08 d1lo1a_ Nuclear receptor
0053658 2937 2010-05-31 d1ynwa1 Nuclear receptor
0036189 176 2005-09-08 d1cxxa1 LIM domain
0037929 475 2005-09-08 d1g47a2 LIM domain
0041629 387 2005-09-08 d1nypa1 LIM domain
0049246 8 2008-09-10 d1rutx4 LIM domain
0050811 81 2008-09-10 d1x4ka2 LIM domain
0050850 391 2008-09-10 d1x63a2 LIM domain
0052307 104 2008-09-10 d2cu8a2 LIM domain
0052404 27 2008-09-10 d2d8xa2 LIM domain
0052446 638 2008-09-10 d2dj7a2 LIM domain
0035408 287 2005-09-08 d1b8ta1 LIM domain
0039082 201 2005-09-08 d1imla1 LIM domain
0040768 148 2005-09-08 d1m3va1 LIM domain
0050786 686 2008-09-10 d1x3ha1 LIM domain
0050847 128 2008-09-10 d1x62a1 LIM domain
0050855 884 2008-09-10 d1x6aa1 LIM domain
0052202 107 2008-09-10 d2cora1 LIM domain
0052319 21 2008-09-10 d2cura1 LIM domain
0052417 156 2008-09-10 d2dara1 LIM domain
0044640 668 2005-09-08 d1v6ga1 LIM domain
0045905 105 2008-09-10 d1b8ta3 LIM domain
0050586 57 2008-09-10 d1wiga2 LIM domain
0050813 29 2008-09-10 d1x4la2 LIM domain
0050852 128 2008-09-10 d1x64a2 LIM domain
0052316 80 2008-09-10 d2cupa3 LIM domain
0052406 282 2008-09-10 d2d8ya2 LIM domain
0052462 191 2008-09-10 d2dloa2 LIM domain
0037928 20 2005-09-08 d1g47a1 LIM domain
0039333 36 2005-09-08 d1j2oa2 LIM domain
0049245 54 2008-09-10 d1rutx3 LIM domain
0050810 507 2008-09-10 d1x4ka1 LIM domain
0050849 53 2008-09-10 d1x63a1 LIM domain
0052306 667 2008-09-10 d2cu8a1 LIM domain
0052403 96 2008-09-10 d2d8xa1 LIM domain
0052445 53 2008-09-10 d2dj7a1 LIM domain
0034932 155 2005-09-08 d1a7ia2 LIM domain
0047389 449 2008-09-10 d1imla2 LIM domain
0050752 340 2008-09-10 d1wyha2 LIM domain
0050846 144 2008-09-10 d1x61a2 LIM domain
0050854 75 2008-09-10 d1x68a2 LIM domain
0052192 876 2008-09-10 d2co8a2 LIM domain
0052318 376 2008-09-10 d2cuqa2 LIM domain
0052408 32 2008-09-10 d2d8za2 LIM domain
0036190 191 2005-09-08 d1cxxa2 LIM domain
0041630 501 2005-09-08 d1nypa2 LIM domain
0045730 47 2008-09-10 d1a7ia1 LIM domain
0050585 407 2008-09-10 d1wiga1 LIM domain
0050812 73 2008-09-10 d1x4la1 LIM domain
0050851 1022 2008-09-10 d1x64a1 LIM domain
0052315 34 2008-09-10 d2cupa2 LIM domain
0052405 875 2008-09-10 d2d8ya1 LIM domain
0052461 324 2008-09-10 d2dloa1 LIM domain
0035409 864 2005-09-08 d1b8ta2 LIM domain
0039332 551 2005-09-08 d1j2oa1 LIM domain
0040769 325 2005-09-08 d1m3va2 LIM domain
0050787 850 2008-09-10 d1x3ha2 LIM domain
0050848 373 2008-09-10 d1x62a2 LIM domain
0050856 83 2008-09-10 d1x6aa2 LIM domain
0052203 29 2008-09-10 d2cora2 LIM domain
0052320 67 2008-09-10 d2cura2 LIM domain
0052418 3298 2008-09-10 d2dara2 LIM domain
0044641 39 2005-09-08 d1v6ga2 LIM domain
0045906 416 2008-09-10 d1b8ta4 LIM domain
0050751 457 2008-09-10 d1wyha1 LIM domain
0050845 66 2008-09-10 d1x61a1 LIM domain
0050853 45 2008-09-10 d1x68a1 LIM domain
0052191 51 2008-09-10 d2co8a1 LIM domain
0052317 81 2008-09-10 d2cuqa1 LIM domain
0052407 121 2008-09-10 d2d8za1 LIM domain
0045122 260 2005-09-08 d1zfoa_ LASP-1
0036273 19 2005-09-08 d1d4ua2 DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
0045056 19 2005-09-08 d1xpaa2 DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
0037546 115 2005-09-08 d1ffkr_ Ribosomal protein L24e
0054594 894 2010-05-31 d2qaln1 Ribosomal protein S14
0037624 286 2005-09-08 d1fjgn_ Ribosomal protein S14
0039950 250 2005-09-08 d1k82a3 C-terminal, Zn-finger domain of MutM-like DNA repair proteins
0048881 915 2008-09-10 d1q3ba3 C-terminal, Zn-finger domain of MutM-like DNA repair proteins
0041473 252 2005-09-08 d1nnja3 C-terminal, Zn-finger domain of MutM-like DNA repair proteins
0043947 9 2005-09-08 d1tdha3 C-terminal, Zn-finger domain of MutM-like DNA repair proteins
0036936 254 2005-09-08 d1ee8a3 C-terminal, Zn-finger domain of MutM-like DNA repair proteins
0049092 919 2008-09-10 d1r2za3 C-terminal, Zn-finger domain of MutM-like DNA repair proteins
0040677 72 2005-09-08 d1lv3a_ Hypothetical zinc finger protein YacG
0042543 129 2005-09-08 d1pzwa_ Transcription factor grauzone Cg33133-Pa, zinc finger associated domain
0042049 171 2005-09-08 d1ovxa_ ClpX chaperone zinc binding domain
0044540 86 2005-09-08 d1uw0a_ PARP-type zinc finger
0044030 255 2005-09-08 d1tjla2 Prokaryotic DksA/TraR C4-type zinc finger
0051139 548 2008-09-10 d1xx6a2 Type II thymidine kinase zinc finger
0050907 506 2008-09-10 d1xbta2 Type II thymidine kinase zinc finger
0051943 550 2008-09-10 d2b8ta2 Type II thymidine kinase zinc finger
0052126 289 2008-09-10 d2c7na1 A20-like zinc finger
0053805 916 2010-05-31 d2d8ra1 THAP domain
0053809 92 2010-05-31 d2dasa1 TRASH domain
0053982 4 2010-05-31 d2gvia2 FwdE C-terminal domain-like


Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.