SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Microbial and mitochondrial ADK, insert "zinc finger" domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Microbial and mitochondrial ADK, insert "zinc finger" domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049307 996 2008-09-10 d1s3ga2 Microbial and mitochondrial ADK, insert "zinc finger" domain
0045789 979 2008-09-10 d1akya2 Microbial and mitochondrial ADK, insert "zinc finger" domain
0045114 153 2005-09-08 d1zaka2 Microbial and mitochondrial ADK, insert "zinc finger" domain
0048690 998 2008-09-10 d1p3ja2 Microbial and mitochondrial ADK, insert "zinc finger" domain
0045786 855 2008-09-10 d1ak2a2 Microbial and mitochondrial ADK, insert "zinc finger" domain
0051783 949 2008-09-10 d2ak3a2 Microbial and mitochondrial ADK, insert "zinc finger" domain
0046460 962 2008-09-10 d1e4ya2 Microbial and mitochondrial ADK, insert "zinc finger" domain
0045124 174 2005-09-08 d1zina2 Microbial and mitochondrial ADK, insert "zinc finger" domain