SUPERFAMILY 1.75 HMM library and genome assignments server

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Zinc beta-ribbon superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 13 SUPERFAMILY models representing the Zinc beta-ribbon superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049068 618 2008-09-10 d1qypa_ Transcriptional factor domain
0047305 96 2008-09-10 d1i50i1 Transcriptional factor domain
0050145 29 2008-09-10 d1vd4a_ Transcriptional factor domain
0048749 372 2008-09-10 d1pfta_ Transcriptional factor domain
0046355 355 2008-09-10 d1dl6a_ Transcriptional factor domain
0049613 624 2008-09-10 d1tfia_ Transcriptional factor domain
0047306 602 2008-09-10 d1i50i2 Transcriptional factor domain
0041574 31 2005-09-08 d1nuia2 DNA primase zinc finger
0046246 1258 2008-09-10 d1d0qa_ DNA primase zinc finger
0045108 30 2005-09-08 d1yuaa2 Prokaryotic DNA topoisomerase I, a C-terminal fragment
0045107 139 2005-09-08 d1yuaa1 Prokaryotic DNA topoisomerase I, a C-terminal fragment
0050588 115 2008-09-10 d1wiia_ Putative zinc binding domain
0051787 271 2008-09-10 d2akla2 PhnA zinc-binding domain