SUPERFAMILY 1.75 HMM library and genome assignments server

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Zn-binding ribosomal proteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 14 SUPERFAMILY models representing the Zn-binding ribosomal proteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046773 257 2008-09-10 d1ffkw_ Ribosomal protein L37ae
0047598 257 2008-09-10 d1jj2y_ Ribosomal protein L37ae
0049333 256 2008-09-10 d1s72z_ Ribosomal protein L37ae
0046774 235 2008-09-10 d1ffkx_ Ribosomal protein L37e
0037554 70 2005-09-08 d1ffkz_ Ribosomal protein L44e
0049062 296 2008-09-10 d1qxfa_ Ribosomal protein S27e
0054172 735 2010-05-31 d2j0151 Ribosomal protein L32p
0054795 727 2010-05-31 d2zjrz1 Ribosomal protein L32p
0053069 565 2008-09-10 d2i2t01 Ribosomal protein L32p
0052971 869 2008-09-10 d2gya11 Ribosomal protein L33p
0054173 757 2010-05-31 d2j0161 Ribosomal protein L33p
0054768 790 2010-05-31 d2zjr11 Ribosomal protein L33p
0053725 133 2010-05-31 d2ayja1 Ribosomal protein L40e
0054253 167 2010-05-31 d2k4xa1 Ribosomal protein S27a