SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

B-box zinc-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the B-box zinc-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053819 1322 2010-05-31 d2dida1 B-box zinc-binding domain
0053788 2228 2010-05-31 d2csva1 B-box zinc-binding domain
0053840 1984 2010-05-31 d2dq5a1 B-box zinc-binding domain
0053807 60 2010-05-31 d2d8va1 B-box zinc-binding domain
0037745 444 2005-09-08 d1frea_ B-box zinc-binding domain
0053822 2326 2010-05-31 d2djaa1 B-box zinc-binding domain
0053806 1638 2010-05-31 d2d8ua1 B-box zinc-binding domain