SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Cysteine-rich domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Cysteine-rich domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043160 707 2005-09-08 d1r79a_ Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
0047776 2584 2008-09-10 d1kbea_ Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
0042462 781 2005-09-08 d1ptqa_ Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
0050894 2893 2008-09-10 d1xa6a3 Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
0043932 904 2005-09-08 d1tboa_ Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
0037470 817 2005-09-08 d1faqa_ Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
0053663 117 2010-05-31 d1z60a1 TFIIH p44 subunit cysteine-rich domain
0050054 672 2008-09-10 d1v5na_ C1-like domain