SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

SNARE fusion complex superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 20 SUPERFAMILY models representing the SNARE fusion complex superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053429 275 2009-01-20 d1gl2c_ SNARE fusion complex
0053472 55 2009-01-20 d1l4ae_ SNARE fusion complex
0054809 226 2010-05-31 d3b5nc1 SNARE fusion complex
0053469 1014 2009-01-20 d1l4ab_ SNARE fusion complex
0053514 1009 2009-01-20 d1sfcj_ SNARE fusion complex
0053456 294 2009-01-20 d1jthc_ SNARE fusion complex
0053511 741 2009-01-20 d1sfca_ SNARE fusion complex
0053428 321 2009-01-20 d1gl2b_ SNARE fusion complex
0053471 655 2009-01-20 d1l4ad_ SNARE fusion complex
0054808 696 2010-05-31 d3b5na1 SNARE fusion complex
0053468 723 2009-01-20 d1l4aa_ SNARE fusion complex
0053513 718 2009-01-20 d1sfch_ SNARE fusion complex
0053430 665 2009-01-20 d1gl2d_ SNARE fusion complex
0053487 235 2009-01-20 d1nhla_ SNARE fusion complex
0054810 966 2010-05-31 d3b5nj1 SNARE fusion complex
0053427 106 2009-01-20 d1gl2a_ SNARE fusion complex
0053470 300 2009-01-20 d1l4ac_ SNARE fusion complex
0053529 529 2009-01-20 d1urqa_ SNARE fusion complex
0053465 54 2009-01-20 d1kile_ SNARE fusion complex
0053512 378 2009-01-20 d1sfcc_ SNARE fusion complex