SUPERFAMILY 1.75 HMM library and genome assignments server

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Virus ectodomain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 17 SUPERFAMILY models representing the Virus ectodomain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053421 2273 2009-01-20 d1g5gd2 Virus ectodomain
0053515 1322 2009-01-20 d1svfa_ Virus ectodomain
0053407 13003 2009-01-20 d1enva_ Virus ectodomain
0053484 895 2009-01-20 d1mg1a2 Virus ectodomain
0053451 353 2009-01-20 d1jek.1 Virus ectodomain
0053544 1013 2009-01-20 d1y4ma1 Virus ectodomain
0053420 401 2009-01-20 d1g2c.1 Virus ectodomain
0053496 12967 2009-01-20 d1qbzc_ Virus ectodomain
0053406 381 2009-01-20 d1eboc_ Virus ectodomain
0053454 12358 2009-01-20 d1jq0a_ Virus ectodomain
0053928 100 2010-05-31 d2fyz.1 Virus ectodomain
0053433 12435 2009-01-20 d1gzl.2 Virus ectodomain
0053516 16 2009-01-20 d1svfb_ Virus ectodomain
0053410 12532 2009-01-20 d1f23f_ Virus ectodomain
0053485 1014 2009-01-20 d1mofa_ Virus ectodomain
0053453 12330 2009-01-20 d1jpxa_ Virus ectodomain
0053575 10003 2009-01-20 d2siv.1 Virus ectodomain