SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

BAG domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the BAG domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044404 58 2005-09-08 d1uk5a_ BAG domain
0047318 50 2008-09-10 d1i6za_ BAG domain
0044355 222 2005-09-08 d1ugoa_ BAG domain
0049563 44 2008-09-10 d1t7sa_ BAG domain
0047251 29 2008-09-10 d1hx1b_ BAG domain
0048100 228 2008-09-10 d1m62a_ BAG domain