SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

PABC (PABP) domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the PABC (PABP) domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041463 123 2005-09-08 d1nmra_ PABC (PABP) domain
0038850 121 2005-09-08 d1i2ta_ PABC (PABP) domain
0039536 126 2005-09-08 d1jgna_ PABC (PABP) domain
0038011 125 2005-09-08 d1g9la_ PABC (PABP) domain
0038997 123 2005-09-08 d1ifwa_ PABC (PABP) domain