SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

PX domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the PX domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038437 416 2005-09-08 d1h6ha_ PX domain
0041789 488 2005-09-08 d1ocsa_ PX domain
0051101 2066 2008-09-10 d1xtea_ PX domain
0040149 330 2005-09-08 d1kmda_ PX domain
0047856 729 2008-09-10 d1kq6a_ PX domain