SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

SNARE-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the SNARE-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047143 276 2008-09-10 d1h8ma_ Synatpobrevin N-terminal domain
0038994 143 2005-09-08 d1ifqa_ Synatpobrevin N-terminal domain
0038304 357 2005-09-08 d1gw5s_ Clathrin coat assembly domain
0038303 302 2005-09-08 d1gw5m2 Clathrin coat assembly domain
0038406 106 2005-09-08 d1h3qa_ Sedlin (SEDL)
0041530 5 2005-09-08 d1nrja_ SRP alpha N-terminal domain-like
0052690 100 2008-09-10 d2fh5a1 SRP alpha N-terminal domain-like