SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Intermediate filament protein, coiled coil region superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 4 SUPERFAMILY models representing the Intermediate filament protein, coiled coil region superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053425 841 2009-01-20 d1gk6a_ Intermediate filament protein, coiled coil region
0053541 2190 2009-01-20 d1x8ya_ Intermediate filament protein, coiled coil region
0053424 2243 2009-01-20 d1gk4b_ Intermediate filament protein, coiled coil region
0053426 438 2009-01-20 d1gk7a_ Intermediate filament protein, coiled coil region