SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

SAP domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the SAP domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051622 529 2008-09-10 d1zrja1 SAP domain
0040017 2 2005-09-08 d1kcfa1 SAP domain
0051160 159 2008-09-10 d1y02a1 SAP domain
0039508 48 2005-09-08 d1jeqa1 SAP domain
0052478 243 2008-09-10 d2do1a1 SAP domain
0050065 184 2008-09-10 d1v66a_ SAP domain
0038368 173 2005-09-08 d1h1js_ SAP domain