SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Phage fibre proteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Phage fibre proteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038452 5 2005-09-08 d1h6wa1 Middle part of short tail fibre protein gp12
0039861 177 2005-09-08 d1k28a2 Tail-associated lysozyme gp5, C-terminal domain
0050027 13 2008-09-10 d1v0ea2 Endo-alpha-sialidase
0052558 13 2008-09-10 d2f0ca2 Lactophage receptor-binding protein domain
0051627 1 2008-09-10 d1zrua2 Lactophage receptor-binding protein domain
0053764 36 2010-05-31 d2c3fa1 HylP-like