SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Cullin repeat-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the Cullin repeat-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0054070 569 2010-05-31 d2hyec2 Cullin repeat
0047960 570 2008-09-10 d1ldja2 Cullin repeat
0051932 271 2008-09-10 d2b7ma1 Exocyst complex component
0052372 98 2008-09-10 d2d2sa1 Exocyst complex component