SUPERFAMILY 1.75 HMM library and genome assignments server

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Cap-Gly domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 16 SUPERFAMILY models representing the Cap-Gly domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050557 936 2008-09-10 d1whka_ Cap-Gly domain
0052212 967 2008-09-10 d2cp3a1 Cap-Gly domain
0050554 956 2008-09-10 d1whga_ Cap-Gly domain
0052209 952 2008-09-10 d2coza1 Cap-Gly domain
0050559 706 2008-09-10 d1whma_ Cap-Gly domain
0052214 936 2008-09-10 d2cp6a1 Cap-Gly domain
0050556 961 2008-09-10 d1whja_ Cap-Gly domain
0052211 951 2008-09-10 d2cp2a1 Cap-Gly domain
0048010 956 2008-09-10 d1lpla_ Cap-Gly domain
0052208 959 2008-09-10 d2coya1 Cap-Gly domain
0050558 857 2008-09-10 d1whla_ Cap-Gly domain
0052213 944 2008-09-10 d2cp5a1 Cap-Gly domain
0050555 953 2008-09-10 d1whha_ Cap-Gly domain
0052210 963 2008-09-10 d2cp0a1 Cap-Gly domain
0047463 929 2008-09-10 d1ixda_ Cap-Gly domain
0052207 963 2008-09-10 d2cowa1 Cap-Gly domain