SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Arabinanase/levansucrase/invertase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the Arabinanase/levansucrase/invertase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050007 1066 2008-09-10 d1uv4a1 alpha-L-arabinanase-like
0051222 441 2008-09-10 d1y7ba2 alpha-L-arabinanase-like
0051383 1123 2008-09-10 d1yrza2 alpha-L-arabinanase-like
0052539 1062 2008-09-10 d2exha2 alpha-L-arabinanase-like
0051316 922 2008-09-10 d1yifa2 alpha-L-arabinanase-like
0047083 1253 2008-09-10 d1gyha_ alpha-L-arabinanase-like
0050644 997 2008-09-10 d1wl7a1 alpha-L-arabinanase-like
0048662 413 2008-09-10 d1oyga_ Levansucrase
0051199 1163 2008-09-10 d1y4wa2 Glycosyl hydrolases family 32 N-terminal domain
0050020 642 2008-09-10 d1uypa2 Glycosyl hydrolases family 32 N-terminal domain
0050224 1577 2008-09-10 d1vkda_ TM1225-like predicted glycosylases
0051905 161 2008-09-10 d2b4wa1 LmjF10.1260-like