SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Family A G protein-coupled receptor-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 7 SUPERFAMILY models representing the Family A G protein-coupled receptor-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047106 1349 2008-09-10 d1h2sa_ Bacteriorhodopsin-like
0036704 99 2005-09-08 d1e12a_ Bacteriorhodopsin-like
0044248 99 2005-09-08 d1uaza_ Bacteriorhodopsin-like
0035878 97 2005-09-08 d1c8sa_ Bacteriorhodopsin-like
0050980 1342 2008-09-10 d1xioa_ Bacteriorhodopsin-like
0035839 99 2005-09-08 d1c3wa_ Bacteriorhodopsin-like
0037432 7749 2005-09-08 d1f88a_ Rhodopsin-like