SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Voltage-gated potassium channels superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Voltage-gated potassium channels superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042184 1354 2005-09-08 d1p7ba2 Voltage-gated potassium channels
0037417 1394 2005-09-08 d1f6ga_ Voltage-gated potassium channels
0053690 3968 2010-05-31 d2a9ha1 Voltage-gated potassium channels
0041998 1686 2005-09-08 d1orqc_ Voltage-gated potassium channels
0051014 4112 2008-09-10 d1xl4a2 Voltage-gated potassium channels
0040580 1150 2005-09-08 d1lnqa2 Voltage-gated potassium channels