SUPERFAMILY 1.75 HMM library and genome assignments server

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Families 57/38 glycoside transferase middle domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Families 57/38 glycoside transferase middle domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047239 365 2008-09-10 d1htya1 alpha-mannosidase, domain 2
0048509 282 2008-09-10 d1o7d.1 alpha-mannosidase, domain 2
0039849 12 2005-09-08 d1k1xa1 4-alpha-glucanotransferase, domain 2
0051909 115 2008-09-10 d2b5dx1 AmyC C-terminal domain-like
0044322 28 2005-09-08 d1ufaa1 AmyC C-terminal domain-like