SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

PUA domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 38 SUPERFAMILY models representing the PUA domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039543 126 2005-09-08 d1jhda1 ATP sulfurylase N-terminal domain
0037984 133 2005-09-08 d1g8fa1 ATP sulfurylase N-terminal domain
0044608 131 2005-09-08 d1v47a1 ATP sulfurylase N-terminal domain
0050865 443 2008-09-10 d1x6va1 ATP sulfurylase N-terminal domain
0038846 133 2005-09-08 d1i2da1 ATP sulfurylase N-terminal domain
0052338 1137 2008-09-10 d2cx1a1 PUA domain
0054564 378 2010-05-31 d2q07a1 PUA domain
0043605 19 2005-09-08 d1sgva1 PUA domain
0049549 134 2008-09-10 d1t5ya1 PUA domain
0039128 130 2005-09-08 d1iq8a3 PUA domain
0043106 130 2005-09-08 d1r3ea1 PUA domain
0051810 849 2008-09-10 d2apoa1 PUA domain
0039975 56 2005-09-08 d1k8wa3 PUA domain
0042644 362 2005-09-08 d1q7ha1 PUA domain
0052541 1065 2008-09-10 d2ey4a1 PUA domain
0044757 170 2005-09-08 d1vhka1 YggJ N-terminal domain-like
0041612 180 2005-09-08 d1nxza1 YggJ N-terminal domain-like
0050072 4 2008-09-10 d1v6za1 YggJ N-terminal domain-like
0043893 40 2005-09-08 d1t62a_ Hypothetical protein EF3133
0052482 140 2008-09-10 d2dp9a1 Hypothetical protein TTHA0113
0051036 85 2008-09-10 d1xnea_ ProFAR isomerase associated domain
0049288 62 2008-09-10 d1s04a_ ProFAR isomerase associated domain
0049603 87 2008-09-10 d1te7a_ yqfB-like
0050660 231 2008-09-10 d1wmma1 Atu2648/PH1033-like
0051817 431 2008-09-10 d2ar1a1 Atu2648/PH1033-like
0052864 448 2008-09-10 d2gbsa1 Atu2648/PH1033-like
0051555 428 2008-09-10 d1zcea1 Atu2648/PH1033-like
0052524 432 2008-09-10 d2evea1 Atu2648/PH1033-like
0052824 418 2008-09-10 d2g2xa1 Atu2648/PH1033-like
0051929 35 2008-09-10 d2b78a1 Hypothetical RNA methyltransferase domain (HRMD)
0050744 4 2008-09-10 d1wxxa1 Hypothetical RNA methyltransferase domain (HRMD)
0051822 1094 2008-09-10 d2as0a1 Hypothetical RNA methyltransferase domain (HRMD)
0051540 751 2008-09-10 d1zboa1 LON domain-like
0051801 1263 2008-09-10 d2anea1 LON domain-like
0053955 4 2010-05-31 d2gmqa1 PrgU-like
0054831 256 2010-05-31 d3bi7a1 SRA domain-like
0054796 254 2010-05-31 d2zkda1 SRA domain-like
0054301 27 2010-05-31 d2nwaa1 YtmB-like