SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

Glycoside hydrolase/deacetylase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 17 SUPERFAMILY models representing the Glycoside hydrolase/deacetylase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041730 611 2005-09-08 d1o7d.3 alpha-mannosidase
0038723 652 2005-09-08 d1htya3 alpha-mannosidase
0047723 1522 2008-09-10 d1k1xa3 4-alpha-glucanotransferase, N-terminal domain
0048464 1298 2008-09-10 d1ny1a_ NodB-like polysaccharide deacetylase
0052092 2570 2008-09-10 d2c1ia1 NodB-like polysaccharide deacetylase
0053151 2857 2008-09-10 d2j13a1 NodB-like polysaccharide deacetylase
0052143 1667 2008-09-10 d2cc0a1 NodB-like polysaccharide deacetylase
0053130 1064 2008-09-10 d2iw0a1 NodB-like polysaccharide deacetylase
0052123 1302 2008-09-10 d2c71a1 NodB-like polysaccharide deacetylase
0051910 391 2008-09-10 d2b5dx2 AmyC N-terminal domain-like
0044323 80 2005-09-08 d1ufaa2 AmyC N-terminal domain-like
0052426 512 2008-09-10 d2dfaa1 LamB/YcsF-like
0051128 512 2008-09-10 d1xw8a_ LamB/YcsF-like
0050069 512 2008-09-10 d1v6ta_ LamB/YcsF-like
0051516 1910 2008-09-10 d1z7aa1 PA1517-like
0053198 286 2008-09-10 d2nlya1 Divergent polysaccharide deacetylase
0054093 352 2010-05-31 d2i5ia1 YdjC-like