SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

GAT-like domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the GAT-like domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039330 32 2005-09-08 d1j2jb_ GAT domain
0048660 368 2008-09-10 d1oxza_ GAT domain
0053631 367 2010-05-31 d1wrda1 GAT domain
0053630 386 2010-05-31 d1wr6a1 GAT domain
0038571 90 2005-09-08 d1hf8a1 Phosphoinositide-binding clathrin adaptor, domain 2
0047255 282 2008-09-10 d1hx8a1 Phosphoinositide-binding clathrin adaptor, domain 2