SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from Please contact us if you experience any problems.

CoA-transferase family III (CaiB/BaiF) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the CoA-transferase family III (CaiB/BaiF) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042642 774 2005-09-08 d1q7ea_ CoA-transferase family III (CaiB/BaiF)
0050996 2643 2008-09-10 d1xk7a1 CoA-transferase family III (CaiB/BaiF)
0042164 776 2005-09-08 d1p5ha_ CoA-transferase family III (CaiB/BaiF)
0050868 2537 2008-09-10 d1x74a1 CoA-transferase family III (CaiB/BaiF)