SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Plant ANatomical entity (PAN): shoot system vascular system

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant anatomical entity [PO:0025131] <3>
+ + + 3:   collective plant structure [PO:0025497] <2>(568|768) (570|338|104)
+ + + 3:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + 2:   whole plant [PO:0000003] <7>(223|355) (227|170|61)
+ + 2:   collective plant organ structure [PO:0025007] <7>(531|726) (533|315|98)
+ + 2:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ 1:   shoot system [PO:0009006] <18>(516|705) (517|311|98)
+ 1:   vascular system [PO:0000034] <15>(25|31) (26|11|2)
0:   shoot system vascular system [PO:0025205] <4>(10|10) (10|3|0)
- 1:   phyllome vascular system [PO:0025206] <6>(5|6) (5|2|0)
- 1:   flower vascular system [PO:0005017] <4>(2|2) (2|1|0)
- 1:   shoot axis vascular system [PO:0000039] <1>(3|2) (3|1|0)
- 1:   inflorescence vascular system [PO:0005028](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Cupredoxins0.0000000002049Direct
CheY-like0.000000001457Direct
Chlorophyll a-b binding protein0.00000002453Direct
RuBisCO, small subunit0.00000008102Direct
Transducin (alpha subunit), insertion domain0.00000008102Direct
Homeodomain-like0.00003678Direct
Subtilisin-like0.00005922Direct
NAC domain0.0003532Direct
MFS general substrate transporter0.002888Inherited
Clavaminate synthase-like0.1707Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Adenosine-5'phosphosulfate kinase (APS kinase)0Direct
Multidomain cupredoxins0.0000000000002208Direct
CheY-related0.0000000002237Direct
Chlorophyll a-b binding protein0.00000005805Direct
Transducin (alpha subunit), insertion domain0.00000008691Direct
GARP response regulators0.000006903Direct
Subtilases0.00007353Direct
NAC domain0.000463Direct
Glycosyl transferases group 10.0008744Direct
Penicillin synthase-like0.07026Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cupredoxins0.0000000001583Direct
CheY-like0.000000001126Direct
Chlorophyll a-b binding protein0.00000001899Direct
RuBisCO, small subunit0.00000006279Direct
Transducin (alpha subunit), insertion domain0.00000006279Direct
Homeodomain-like0.00002874Direct
Subtilisin-like0.00004633Direct
NAC domain0.0002782Direct
MFS general substrate transporter0.002306Inherited
Clavaminate synthase-like0.1524Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49503,49503
  • 49503 - Cupredoxins
  • 49503 - Cupredoxins
  • 0.0000000000001144Direct
    52172,46689
  • 52172 - CheY-like
  • 46689 - Homeodomain-like
  • 0.000000000004031Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000006279Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)