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Enzyme Commission (EC): Phosphoric monoester hydrolases
(show info)
Phenotype Ontology
Like Gene Ontology (GO), phenotypy ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Phenotype ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology (DO) DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology (HP) HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology (MP) MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology (WP) WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology (YP) Based on YP which is the major contributor to the Ascomycete phenotype ontology, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology (FP) FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology (FA) FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology (ZA) ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology (XA) XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology (AP) As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology (EC) Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- DrugBank ATC (DB) Ontology (DB) In the Anatomical Therapeutic Chemical (ATC) classification system, drugs are classified in groups at five different levels according to the organ or system (1st level, anatomical main group) on which they act and their therapeutic (2nd level, therapeutic subgroup), pharmacological (3rd level, pharmacological subgroup) and chemical properties (4th level, chemical subgroup; 5th level, chemical substance). Only drugs in DrugBank are considered.
- UniProtKB KeyWords (KW) Ontology (KW) Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- UniProtKB UniPathway (UP) Ontology (UP) UP is a fully manually curated resource for the representation and annotation of metabolic pathways, being used as controlled vocabulary for pathway annotation in UniProtKB.
Structural Domain Phenotype Ontology and its Annotations
Structural Classification of Proteins (SCOP) classifies evolutionary-related domains into Superfamily level and Family level. Using the phenotype ontologies above, we have generated the domain-centric phenotype annotations, and further identified those phenotype terms which are the most informative to annotate SCOP domains. Promisingly, domain-centric phenotypic annotations can serve as an alternative starting point to explore genotype-phenotype relationships. We provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Structural Domain Disease Ontology (DO) Ontology (SDDO) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DO.txt, and the corresponding ontology:SDDO.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Human Phenotype (HP) Ontology (SDHP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2HP.txt, and the corresponding ontology:SDHP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Mouse Phenotype (MP) Ontology (SDMP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2MP.txt, and the corresponding ontology:SDMP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Worm Phenotype (WP) Ontology (SDWP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2WP.txt, and the corresponding ontology:SDWP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Yeast Phenotype (YP) Ontology (SDYP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2YP.txt, and the corresponding ontology:SDYP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Phenotype (FP) Ontology (SDFP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FP.txt, and the corresponding ontology:SDFP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Anatomy (FA) Ontology (SDFA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FA.txt, and the corresponding ontology:SDFA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Zebrafish Anatomy (ZA) Ontology (SDZA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2ZA.txt, and the corresponding ontology:SDZA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Xenopus Anatomy (XA) Ontology (SDXA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2XA.txt, and the corresponding ontology:SDXA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Arabidopsis Plant Ontology (AP) Ontology (SDAP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2AP.txt, and the corresponding ontology:SDAP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Enzyme Commission (EC) Ontology (SDEC) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2EC.txt, and the corresponding ontology:SDEC.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain DrugBank ATC (DB) Ontology (SDDB) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DB.txt, and the corresponding ontology:SDDB.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB KeyWords (KW) Ontology (SDKW) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2KW.txt, and the corresponding ontology:SDKW.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB UniPathway (UP) Ontology (SDUP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2UP.txt, and the corresponding ontology:SDUP.txt) and mysql tables (Domain2PO.sql.gz).
Supra-domain Phenotype Ontology and its Annotations
Although domain-centric annotations hold great promise in describing phenotypic nature of independent domains, most domains themselves may not just work alone. In multi-domain proteins, they may be combined together to form distinct domain architectures. The recombination of the existing domains is considered as one of major driving forces for phenotypic diversificaation. As an extension, we have also generated supra-domain phenotype ontology and its annotations. Compared to domain-centric phenotype ontology and annotations (SCOP domains at the Superfamily level and Family level), this version focuses on supra-domains and individual SCOP domains ONLY at the Superfamily level. Besides, in terms of individual superfamilies, their annotations from the domain-centric version may be different from those from supra-domains version. Depending on your focus, the former should be used for the consideration of both the Superfamily level and Family level, otherwise the latter should be used if you are interested in domain combinations. Also, we provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Supra-domain Domain Disease Ontology (DO) Ontology (SPDO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DO.txt, and the corresponding ontology:SPDO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Human Phenotype (HP) Ontology (SPHO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2HP.txt, and the corresponding ontology:SPHO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Mouse Phenotype (MP) Ontology (SPMP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2MP.txt, and the corresponding ontology:SPMP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Worm Phenotype (WP) Ontology (SPWP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2WP.txt, and the corresponding ontology:SPWP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Yeast Phenotype (YP) Ontology (SPYP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2YP.txt, and the corresponding ontology:SPYP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Phenotype (FP) Ontology (SPFP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FP.txt, and the corresponding ontology:SPFP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Anatomy (FA) Ontology (SPFA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FA.txt, and the corresponding ontology:SPFA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Zebrafish Anatomy (ZA) Ontology (SPZA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2ZA.txt, and the corresponding ontology:SPZA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Xenopus Anatomy (XA) Ontology (SPXA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2XA.txt, and the corresponding ontology:SPXA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Arabidopsis Plant Ontology (AP) Ontology (SPAP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2AP.txt, and the corresponding ontology:SPAP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Enzyme Commission (EC) Ontology (SPEC) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2EC.txt, and the corresponding ontology:SPEC.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain DrugBank ATC (DB) Ontology (SPDB) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DB.txt, and the corresponding ontology:SPDB.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB KeyWords (KW) Ontology (SPKW) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2KW.txt, and the corresponding ontology:SPKW.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB UniPathway (UP) Ontology (SPUP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2UP.txt, and the corresponding ontology:SPUP.txt) and mysql tables (SP2PO.sql.gz).
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Root: EC Hierarchy (from IntEnz release 70)
Shortest distance to current term (+ for parents, - for children) |
EC term [EC ID] <#Children> |
(#SF|#FA) |
#Supra-domain (Single|Duplex|Triple) |
+ + + 3: | root [root] <7> |
+ + 2: | Hydrolases [3] <13> | (396|669) |
(395|421|209) |
+ 1: | Acting on ester bonds [3.1] <23> | (157|226) |
(157|126|55) |
0: | Phosphoric monoester hydrolases [3.1.3] <112> | (60|78) |
(60|45|12) |
- 1: | 2,3-bisphosphoglycerate 3-phosphatase [3.1.3.80] | (1|1) |
(1|0|0) |
- 1: | 2-carboxy-D-arabinitol-1-phosphatase [3.1.3.63] | (0|0) |
(0|0|0) |
- 1: | 2-deoxyglucose-6-phosphatase [3.1.3.68] | (0|0) |
(0|0|0) |
- 1: | 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [3.1.3.87] | (1|1) |
(1|0|0) |
- 1: | 2-lysophosphatidate phosphatase [3.1.3.106] | (0|0) |
(0|0|0) |
- 1: | 2-phosphosulfolactate phosphatase [3.1.3.71] | (1|1) |
(1|0|0) |
- 1: | 3'(2'),5'-bisphosphate nucleotidase [3.1.3.7] | (2|1) |
(2|0|0) |
- 1: | 3',5'-nucleoside bisphosphate phosphatase [3.1.3.97] | (1|1) |
(1|0|0) |
- 1: | 3'-nucleotidase [3.1.3.6] | (2|3) |
(2|1|0) |
- 1: | 3-deoxy-D-glycero-D-galacto-nonulopyranosonate 9-phosphatase [3.1.3.103] | (0|0) |
(0|0|0) |
- 1: | 3-deoxy-manno-octulosonate-8-phosphatase [3.1.3.45] | (1|1) |
(1|0|0) |
- 1: | 3-phosphoglycerate phosphatase [3.1.3.38] | (0|0) |
(0|0|0) |
- 1: | 3-phytase [3.1.3.8] | (2|2) |
(2|0|0) |
- 1: | 4-nitrophenylphosphatase [3.1.3.41] | (0|0) |
(0|0|0) |
- 1: | 4-phytase [3.1.3.26] | (0|0) |
(0|0|0) |
- 1: | 5''-phosphoribostamycin phosphatase [3.1.3.88] | (0|0) |
(0|0|0) |
- 1: | 5'-deoxynucleotidase [3.1.3.89] | (1|1) |
(1|0|0) |
- 1: | 5'-nucleotidase [3.1.3.5] | (2|5) |
(2|1|0) |
- 1: | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [3.1.3.104] | (1|1) |
(1|0|0) |
- 1: | 5-phytase [3.1.3.72] | (0|0) |
(0|0|0) |
- 1: | 7-methylguanosine nucleotidase [3.1.3.91] | (1|1) |
(1|0|0) |
- 1: | ADP-phosphoglycerate phosphatase [3.1.3.28] | (0|0) |
(0|0|0) |
- 1: | ADP-ribose 1''-phosphate phosphatase [3.1.3.84] | (4|1) |
(4|1|0) |
- 1: | Acid phosphatase [3.1.3.2] | (4|6) |
(4|1|0) |
- 1: | Acireductone synthase [3.1.3.77] | (2|2) |
(2|1|0) |
- 1: | Adenosylcobalamin/alpha-ribazole phosphatase [3.1.3.73] | (1|0) |
(1|0|0) |
- 1: | Alkaline phosphatase [3.1.3.1] | (2|2) |
(2|0|0) |
- 1: | Alkylacetylglycerophosphatase [3.1.3.59] | (0|0) |
(0|0|0) |
- 1: | Caldesmon-phosphatase [3.1.3.55] | (0|0) |
(0|0|0) |
- 1: | D-galactose 1-phosphate phosphatase [3.1.3.94] | (1|1) |
(1|0|0) |
- 1: | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase [3.1.3.83] | (1|1) |
(1|0|0) |
- 1: | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase [3.1.3.82] | (1|1) |
(1|0|0) |
- 1: | Deleted entry [3.1.3.61] | (0|0) |
(0|0|0) |
- 1: | Deleted entry [3.1.3.13] | (0|0) |
(0|0|0) |
- 1: | Deoxynucleotide 3'-phosphatase [3.1.3.34] | (0|0) |
(0|0|0) |
- 1: | Diacylglycerol diphosphate phosphatase [3.1.3.81] | (1|0) |
(1|0|0) |
- 1: | Dolichyl-phosphatase [3.1.3.51] | (0|0) |
(0|0|0) |
- 1: | FMN hydrolase [3.1.3.102] | (0|0) |
(0|0|0) |
- 1: | Fructose-2,6-bisphosphate 2-phosphatase [3.1.3.46] | (2|3) |
(2|1|0) |
- 1: | Fructose-2,6-bisphosphate 6-phosphatase [3.1.3.54] | (0|0) |
(0|0|0) |
- 1: | Fructose-bisphosphatase [3.1.3.11] | (2|3) |
(2|1|0) |
- 1: | Glucose-1-phosphatase [3.1.3.10] | (1|1) |
(1|0|0) |
- 1: | Glucose-6-phosphatase [3.1.3.9] | (1|0) |
(1|0|0) |
- 1: | Glucosyl-3-phosphoglycerate phosphatase [3.1.3.85] | (0|0) |
(0|0|0) |
- 1: | Glucosylglycerol 3-phosphatase [3.1.3.69] | (0|0) |
(0|0|0) |
- 1: | Glycerol-1-phosphatase [3.1.3.21] | (1|1) |
(1|0|0) |
- 1: | Glycerol-2-phosphatase [3.1.3.19] | (0|0) |
(0|0|0) |
- 1: | Guanidinodeoxy-scyllo-inositol-4-phosphatase [3.1.3.40] | (0|0) |
(0|0|0) |
- 1: | Histidinol-phosphatase [3.1.3.15] | (3|3) |
(3|2|1) |
- 1: | IMP-specific 5'-nucleotidase [3.1.3.99] | (1|0) |
(1|0|0) |
- 1: | Inositol-1,4-bisphosphate 1-phosphatase [3.1.3.57] | (1|1) |
(1|0|0) |
- 1: | Inositol-phosphate phosphatase [3.1.3.25] | (1|1) |
(1|0|0) |
- 1: | Inositol-polyphosphate 5-phosphatase [3.1.3.56] | (3|3) |
(3|0|0) |
- 1: | Kanosamine-6-phosphate phosphatase [3.1.3.92] | (0|0) |
(0|0|0) |
- 1: | L-galactose 1-phosphate phosphatase [3.1.3.93] | (0|0) |
(0|0|0) |
- 1: | Lipid-phosphate phosphatase [3.1.3.76] | (1|2) |
(1|1|0) |
- 1: | Maltose 6'-phosphate phosphatase [3.1.3.90] | (0|0) |
(0|0|0) |
- 1: | Mannitol-1-phosphatase [3.1.3.22] | (0|0) |
(0|0|0) |
- 1: | Mannosyl-3-phosphoglycerate phosphatase [3.1.3.70] | (1|1) |
(1|0|0) |
- 1: | Mannosylfructose-phosphate phosphatase [3.1.3.79] | (0|0) |
(0|0|0) |
- 1: | Methylphosphothioglycerate phosphatase [3.1.3.14] | (0|0) |
(0|0|0) |
- 1: | Multiple inositol-polyphosphate phosphatase [3.1.3.62] | (1|1) |
(1|0|0) |
- 1: | N-acetyl-D-muramate 6-phosphate phosphatase [3.1.3.105] | (0|0) |
(0|0|0) |
- 1: | N-acylneuraminate-9-phosphatase [3.1.3.29] | (0|1) |
(0|0|0) |
- 1: | Nucleotidase [3.1.3.31] | (0|0) |
(0|0|0) |
- 1: | Phosphatidate phosphatase [3.1.3.4] | (1|0) |
(1|0|0) |
- 1: | Phosphatidylglycerophosphatase [3.1.3.27] | (1|0) |
(1|0|0) |
- 1: | Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase [3.1.3.67] | (2|2) |
(2|1|0) |
- 1: | Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase [3.1.3.86] | (4|4) |
(4|1|0) |
- 1: | Phosphatidylinositol-3,4-bisphosphate 4-phosphatase [3.1.3.66] | (1|0) |
(1|0|0) |
- 1: | Phosphatidylinositol-3,5-bisphosphate 3-phosphatase [3.1.3.95] | (3|3) |
(3|1|0) |
- 1: | Phosphatidylinositol-3-phosphatase [3.1.3.64] | (3|3) |
(3|1|0) |
- 1: | Phosphatidylinositol-4,5-bisphosphate 4-phosphatase [3.1.3.78] | (0|0) |
(0|0|0) |
- 1: | Phosphoenolpyruvate phosphatase [3.1.3.60] | (0|0) |
(0|0|0) |
- 1: | Phosphoethanolamine/phosphocholine phosphatase [3.1.3.75] | (0|0) |
(0|0|0) |
- 1: | Phosphoglycerate phosphatase [3.1.3.20] | (0|0) |
(0|0|0) |
- 1: | Phosphoglycolate phosphatase [3.1.3.18] | (1|2) |
(1|0|0) |
- 1: | Phosphoinositide 5-phosphatase [3.1.3.36] | (4|4) |
(4|2|0) |
- 1: | Phosphoserine phosphatase [3.1.3.3] | (2|2) |
(2|0|0) |
- 1: | Polynucleotide 3'-phosphatase [3.1.3.32] | (2|2) |
(2|1|0) |
- 1: | Polynucleotide 5'-phosphatase [3.1.3.33] | (6|4) |
(6|4|1) |
- 1: | Protein-serine/threonine phosphatase [3.1.3.16] | (11|10) |
(11|8|0) |
- 1: | Protein-tyrosine-phosphatase [3.1.3.48] | (21|23) |
(21|19|9) |
- 1: | Pseudouridine 5'-phosphatase [3.1.3.96] | (0|1) |
(0|0|0) |
- 1: | Pyridoxal phosphatase [3.1.3.74] | (1|2) |
(1|0|0) |
- 1: | Sedoheptulose-bisphosphatase [3.1.3.37] | (1|1) |
(1|0|0) |
- 1: | Sorbitol-6-phosphatase [3.1.3.50] | (0|0) |
(0|0|0) |
- 1: | Streptomycin-6-phosphatase [3.1.3.39] | (0|0) |
(0|0|0) |
- 1: | Sucrose-phosphate phosphatase [3.1.3.24] | (2|1) |
(2|1|0) |
- 1: | Sugar-phosphatase [3.1.3.23] | (1|1) |
(1|0|0) |
- 1: | Sugar-terminal-phosphatase [3.1.3.58] | (0|0) |
(0|0|0) |
- 1: | Thiamine phosphate phosphatase [3.1.3.100] | (0|0) |
(0|0|0) |
- 1: | Thymidylate 5'-phosphatase [3.1.3.35] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.31 [3.1.3.30] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.64 [3.1.3.65] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.78 [3.1.3.n3] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.84 [3.1.3.n2] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.86 [3.1.3.n1] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.87 [3.1.3.n4] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.93 [3.1.3.n5] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.1.3.96 [3.1.3.n6] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 3.6.1.68 [3.1.3.98] | (0|0) |
(0|0|0) |
- 1: | Trehalose-phosphatase [3.1.3.12] | (2|2) |
(2|2|0) |
- 1: | Validoxylamine A 7'-phosphate phosphatase [3.1.3.101] | (0|0) |
(0|0|0) |
- 1: | [Acetyl-CoA carboxylase]-phosphatase [3.1.3.44] | (0|0) |
(0|0|0) |
- 1: | [Glycogen-synthase-D] phosphatase [3.1.3.42] | (0|0) |
(0|0|0) |
- 1: | [Hydroxymethylglutaryl-CoA reductase (NADPH)]-phosphatase [3.1.3.47] | (0|0) |
(0|0|0) |
- 1: | [Myosin-light-chain] phosphatase [3.1.3.53] | (0|0) |
(0|0|0) |
- 1: | [Phosphorylase] phosphatase [3.1.3.17] | (0|0) |
(0|0|0) |
- 1: | [Pyruvate dehydrogenase (acetyl-transferring)]-phosphatase [3.1.3.43] | (1|1) |
(1|0|0) |
- 1: | [Pyruvate kinase]-phosphatase [3.1.3.49] | (0|0) |
(0|0|0) |
- 1: | phosphatase [3.1.3.52] | (0|0) |
(0|0|0) |
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Superfamily(show details)
Superfamily domains annotated to this EC term (SDEC level: Moderately Informative)
Highlighted in gray are those with FDR_all>0.001
SCOP term | FDR (all) | Annotation (direct or inherited) |
Bacterial GAP domain | 0 | DIRECT |
PP2C-like | 0 | DIRECT |
Sulfolobus fructose-1,6-bisphosphatase-like | 0 | DIRECT |
ComB-like | 0 | DIRECT |
(Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
Voltage-gated potassium channels | 0 | DIRECT |
Purple acid phosphatase, N-terminal domain | 0 | DIRECT |
CRAL/TRIO N-terminal domain | 0 | DIRECT |
Carbohydrate phosphatase | 0 | DIRECT |
HAD-like | 0 | DIRECT |
Phosphotyrosine protein phosphatases I | 0 | DIRECT |
Fibronectin type III | 0 | DIRECT |
SurE-like | 0 | DIRECT |
CYTH-like phosphatases | 0 | DIRECT |
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 0 | DIRECT |
Phosphoglycerate mutase-like | 0 | DIRECT |
Protein serine/threonine phosphatase 2C, C-terminal domain | 0 | DIRECT |
Metallo-dependent phosphatases | 0 | DIRECT |
Rhodanese/Cell cycle control phosphatase | 0 | DIRECT |
Acid phosphatase/Vanadium-dependent haloperoxidase | 0 | DIRECT |
Immunoglobulin | 2.574e-16 | DIRECT |
Second domain of FERM | 0.0000000000000552 | DIRECT |
DEK C-terminal domain | 0.0000000000001386 | DIRECT |
Macro domain-like | 0.00000000004116 | DIRECT |
Ubiquitin-like | 0.000000002276 | DIRECT |
GTPase activation domain, GAP | 0.00000000374 | DIRECT |
NTF2-like | 0.000000009306 | DIRECT |
SH2 domain | 0.000001014 | DIRECT |
Chaperone J-domain | 0.000002091 | DIRECT |
PH domain-like | 0.000007383 | DIRECT |
Kelch motif | 0.00001753 | DIRECT |
CRAL/TRIO domain | 0.00002636 | DIRECT |
Non-globular alpha+beta subunits of globular proteins | 0.0003259 | DIRECT |
FYVE/PHD zinc finger | 0.0005347 | DIRECT |
PDZ domain-like | 0.0008281 | DIRECT |
TPR-like | 0.001105 | INHERITED FROM: Protein-serine/threonine phosphatase |
Carbonic anhydrase | 0.001622 | INHERITED FROM: Protein-tyrosine-phosphatase |
DNase I-like | 0.00168 | INHERITED FROM: Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase || Phosphoinositide 5-phosphatase || Inositol-polyphosphate 5-phosphatase |
SAM/Pointed domain | 0.003047 | INHERITED FROM: Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase |
AraD/HMP-PK domain-like | 0.003544 | INHERITED FROM: Acireductone synthase |
Starch-binding domain-like | 0.0128 | INHERITED FROM: Protein-tyrosine-phosphatase || Protein-serine/threonine phosphatase |
RNA-binding domain, RBD | 0.0197 | INHERITED FROM: Phosphoinositide 5-phosphatase |
DHH phosphoesterases | 0.0284 | INHERITED FROM: 3'(2'),5'-bisphosphate nucleotidase |
Thermostable phytase (3-phytase) | 0.03613 | INHERITED FROM: 3-phytase |
Alkaline phosphatase-like | 0.13 | INHERITED FROM: Alkaline phosphatase |
PHP domain-like | 0.371 | INHERITED FROM: Histidinol-phosphatase || 3',5'-nucleoside bisphosphate phosphatase |
Concanavalin A-like lectins/glucanases | 0.3943 | INHERITED FROM: Protein-tyrosine-phosphatase |
L domain-like | 0.7469 | INHERITED FROM: Protein-serine/threonine phosphatase |
EF-hand | 1 | INHERITED FROM: Protein-serine/threonine phosphatase |
alpha/beta-Hydrolases | 1 | INHERITED FROM: Lipid-phosphate phosphatase |
S-adenosyl-L-methionine-dependent methyltransferases | 1 | INHERITED FROM: ADP-ribose 1''-phosphate phosphatase || Polynucleotide 5'-phosphatase |
ACT-like | 1 | INHERITED FROM: Phosphoserine phosphatase |
C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | INHERITED FROM: Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase || Phosphatidylinositol-3,4-bisphosphate 4-phosphatase || Protein-tyrosine-phosphatase |
UDP-Glycosyltransferase/glycogen phosphorylase | 1 | INHERITED FROM: Trehalose-phosphatase |
HD-domain/PDEase-like | 1 | INHERITED FROM: 5'-deoxynucleotidase |
P-loop containing nucleoside triphosphate hydrolases | 1 | INHERITED FROM: Fructose-2,6-bisphosphate 2-phosphatase || ADP-ribose 1''-phosphate phosphatase || Polynucleotide 5'-phosphatase || Polynucleotide 3'-phosphatase |
Ribosomal protein S5 domain 2-like | 1 | INHERITED FROM: Histidinol-phosphatase |
DNA ligase/mRNA capping enzyme, catalytic domain | 1 | INHERITED FROM: Polynucleotide 5'-phosphatase |
Periplasmic binding protein-like II | 1 | INHERITED FROM: Alkaline phosphatase |
DNA/RNA polymerases | 1 | INHERITED FROM: ADP-ribose 1''-phosphate phosphatase || Polynucleotide 5'-phosphatase |
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Family(show details)
Family domains annotated to this EC term (SDEC level: Informative)
Highlighted in gray are those with FDR_all>0.001
SCOP term | FDR (all) | Annotation (direct or inherited) |
Alkaline phosphatase | 0 | DIRECT |
Cell cycle control phosphatase, catalytic domain | 0 | DIRECT |
YihX-like | 0 | DIRECT |
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 0 | DIRECT |
MtnX-like | 0 | DIRECT |
Sulfolobus fructose-1,6-bisphosphatase-like | 0 | DIRECT |
CRAL/TRIO N-terminal domain | 0 | DIRECT |
Class B acid phosphatase, AphA | 0 | DIRECT |
Inositol polyphosphate 5-phosphatase (IPP5) | 0 | DIRECT |
Phosphoserine phosphatase | 0 | DIRECT |
Dual specificity phosphatase-like | 0 | DIRECT |
Predicted hydrolases Cof | 0 | DIRECT |
Purple acid phosphatase-like | 0 | DIRECT |
Protein serine/threonine phosphatase 2C, C-terminal domain | 0 | DIRECT |
GRAM domain | 0 | DIRECT |
NagD-like | 0 | DIRECT |
Fibronectin type III | 0 | DIRECT |
mRNA triphosphatase CET1 | 0 | DIRECT |
Histidine acid phosphatase | 0 | DIRECT |
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain | 0 | DIRECT |
I set domains | 0 | DIRECT |
Enolase-phosphatase E1 | 0 | DIRECT |
Purple acid phosphatase, N-terminal domain | 0 | DIRECT |
GlpX-like bacterial fructose-1,6-bisphosphatase | 0 | DIRECT |
Trehalose-phosphatase | 0 | DIRECT |
Third domain of FERM | 0 | DIRECT |
Histidinol phosphatase-like | 0 | DIRECT |
beta-Phosphoglucomutase-like | 0 | DIRECT |
SurE-like | 0 | DIRECT |
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain | 0 | DIRECT |
PP2C-like | 0 | DIRECT |
Myotubularin-like phosphatases | 0 | DIRECT |
Low-molecular-weight phosphotyrosine protein phosphatases | 0 | DIRECT |
Protein serine/threonine phosphatase | 0 | DIRECT |
Type 2 phosphatidic acid phosphatase, PAP2 | 0 | DIRECT |
Pyrimidine 5'-nucleotidase (UMPH-1) | 0 | DIRECT |
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain | 0 | DIRECT |
ComB-like | 0 | DIRECT |
Bacterial GAP domain | 0 | DIRECT |
Inositol monophosphatase/fructose-1,6-bisphosphatase-like | 0 | DIRECT |
Magnesium-dependent phosphatase-1, Mdp1 | 0 | DIRECT |
CRAL/TRIO domain | 0 | DIRECT |
Thermostable phytase (3-phytase) | 0 | DIRECT |
5' nucleotidase-like | 0 | DIRECT |
Imidazole glycerol phosphate dehydratase | 0 | DIRECT |
Virulence effector SptP domain | 0 | DIRECT |
Higher-molecular-weight phosphotyrosine protein phosphatases | 0 | DIRECT |
NLI interacting factor-like phosphatase | 0 | DIRECT |
MAM domain | 0.00000000000001602 | DIRECT |
Second domain of FERM | 0.00000000000002439 | DIRECT |
First domain of FERM | 0.00000000000005878 | DIRECT |
phosphatase domain of polynucleotide kinase | 0.0000000000006273 | DIRECT |
Probable phosphatase YrbI | 0.0000000000589 | DIRECT |
DEK C-terminal domain | 0.0000000002415 | DIRECT |
BCR-homology GTPase activation domain (BH-domain) | 0.000000002749 | DIRECT |
PDZ domain | 0.000000003813 | DIRECT |
Ubiquitin-related | 0.000000004096 | DIRECT |
FYVE, a phosphatidylinositol-3-phosphate binding domain | 0.00000001146 | DIRECT |
Macro domain | 0.00000001159 | DIRECT |
Leucine rich effector protein YopM | 0.00000002818 | DIRECT |
SH2 domain | 0.0000007989 | DIRECT |
Chaperone J-domain | 0.000001616 | DIRECT |
HD domain | 0.000002443 | DIRECT |
mRNA capping enzyme | 0.000003269 | DIRECT |
Epoxide hydrolase | 0.00004657 | DIRECT |
Tetratricopeptide repeat (TPR) | 0.00005298 | DIRECT |
mRNA cap (Guanine N-7) methyltransferase | 0.00006087 | DIRECT |
PHP domain | 0.0004035 | DIRECT |
SAM (sterile alpha motif) domain | 0.0004948 | DIRECT |
Carbonic anhydrase | 0.001222 | INHERITED FROM: Protein-tyrosine-phosphatase |
Cofactor-dependent phosphoglycerate mutase | 0.001857 | INHERITED FROM: Fructose-2,6-bisphosphate 2-phosphatase |
AraD-like aldolase/epimerase | 0.002498 | INHERITED FROM: Acireductone synthase |
Trehalose-6-phosphate synthase, OtsA | 0.005568 | INHERITED FROM: Trehalose-phosphatase |
Canonical RBD | 0.01701 | INHERITED FROM: Phosphoinositide 5-phosphatase |
Starch-binding domain | 0.02867 | INHERITED FROM: Protein-tyrosine-phosphatase |
Phosphate binding protein-like | 1 | INHERITED FROM: Alkaline phosphatase |
Nucleotide and nucleoside kinases | 1 | INHERITED FROM: Polynucleotide 3'-phosphatase |
PLC-like (P variant) | 1 | INHERITED FROM: Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase || Protein-tyrosine-phosphatase |
SCOP term | FDR (all) | Annotation (direct or inherited) |
Alkaline phosphatase | 0 | Direct |
Cell cycle control phosphatase, catalytic domain | 0 | Direct |
YihX-like | 0 | Direct |
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 0 | Direct |
MtnX-like | 0 | Direct |
Sulfolobus fructose-1,6-bisphosphatase-like | 0 | Direct |
CRAL/TRIO N-terminal domain | 0 | Direct |
Class B acid phosphatase, AphA | 0 | Direct |
Inositol polyphosphate 5-phosphatase (IPP5) | 0 | Direct |
Phosphoserine phosphatase | 0 | Direct |
Dual specificity phosphatase-like | 0 | Direct |
Predicted hydrolases Cof | 0 | Direct |
Purple acid phosphatase-like | 0 | Direct |
Protein serine/threonine phosphatase 2C, C-terminal domain | 0 | Direct |
GRAM domain | 0 | Direct |
NagD-like | 0 | Direct |
Fibronectin type III | 0 | Direct |
mRNA triphosphatase CET1 | 0 | Direct |
Histidine acid phosphatase | 0 | Direct |
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain | 0 | Direct |
I set domains | 0 | Direct |
Enolase-phosphatase E1 | 0 | Direct |
Purple acid phosphatase, N-terminal domain | 0 | Direct |
GlpX-like bacterial fructose-1,6-bisphosphatase | 0 | Direct |
Trehalose-phosphatase | 0 | Direct |
Third domain of FERM | 0 | Direct |
Histidinol phosphatase-like | 0 | Direct |
beta-Phosphoglucomutase-like | 0 | Direct |
SurE-like | 0 | Direct |
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain | 0 | Direct |
PP2C-like | 0 | Direct |
Myotubularin-like phosphatases | 0 | Direct |
Low-molecular-weight phosphotyrosine protein phosphatases | 0 | Direct |
Protein serine/threonine phosphatase | 0 | Direct |
Type 2 phosphatidic acid phosphatase, PAP2 | 0 | Direct |
Pyrimidine 5'-nucleotidase (UMPH-1) | 0 | Direct |
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain | 0 | Direct |
ComB-like | 0 | Direct |
Bacterial GAP domain | 0 | Direct |
Inositol monophosphatase/fructose-1,6-bisphosphatase-like | 0 | Direct |
Magnesium-dependent phosphatase-1, Mdp1 | 0 | Direct |
CRAL/TRIO domain | 0 | Direct |
Thermostable phytase (3-phytase) | 0 | Direct |
5' nucleotidase-like | 0 | Direct |
Imidazole glycerol phosphate dehydratase | 0 | Direct |
Virulence effector SptP domain | 0 | Direct |
Higher-molecular-weight phosphotyrosine protein phosphatases | 0 | Direct |
NLI interacting factor-like phosphatase | 0 | Direct |
MAM domain | 0.00000000000001602 | Direct |
Second domain of FERM | 0.00000000000002439 | Direct |
First domain of FERM | 0.00000000000005878 | Direct |
phosphatase domain of polynucleotide kinase | 0.0000000000006273 | Direct |
Probable phosphatase YrbI | 0.0000000000589 | Direct |
DEK C-terminal domain | 0.0000000002415 | Direct |
BCR-homology GTPase activation domain (BH-domain) | 0.000000002749 | Direct |
PDZ domain | 0.000000003813 | Direct |
Ubiquitin-related | 0.000000004096 | Direct |
FYVE, a phosphatidylinositol-3-phosphate binding domain | 0.00000001146 | Direct |
Macro domain | 0.00000001159 | Direct |
Leucine rich effector protein YopM | 0.00000002818 | Direct |
SH2 domain | 0.0000007989 | Direct |
Chaperone J-domain | 0.000001616 | Direct |
HD domain | 0.000002443 | Direct |
mRNA capping enzyme | 0.000003269 | Direct |
Epoxide hydrolase | 0.00004657 | Direct |
Tetratricopeptide repeat (TPR) | 0.00005298 | Direct |
mRNA cap (Guanine N-7) methyltransferase | 0.00006087 | Direct |
PHP domain | 0.0004035 | Direct |
SAM (sterile alpha motif) domain | 0.0004948 | Direct |
Carbonic anhydrase | 0.001222 | Inherited |
Cofactor-dependent phosphoglycerate mutase | 0.001857 | Inherited |
AraD-like aldolase/epimerase | 0.002498 | Inherited |
Trehalose-6-phosphate synthase, OtsA | 0.005568 | Inherited |
Canonical RBD | 0.01701 | Inherited |
Starch-binding domain | 0.02867 | Inherited |
Phosphate binding protein-like | 1 | Inherited |
Nucleotide and nucleoside kinases | 1 | Inherited |
PLC-like (P variant) | 1 | Inherited |
Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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(show help)
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A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Supra-domain (including individual superfamily)
(show details)
Supra-domains annotated to this EC term (SPEC level: Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Single) |
FDR (all) |
Annotation (direct or inherited) |
Voltage-gated potassium channels | 0 | DIRECT |
Acid phosphatase/Vanadium-dependent haloperoxidase | 0 | DIRECT |
ComB-like | 0 | DIRECT |
Protein serine/threonine phosphatase 2C, C-terminal domain | 0 | DIRECT |
(Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
Carbohydrate phosphatase | 0 | DIRECT |
Phosphoglycerate mutase-like | 0 | DIRECT |
Phosphotyrosine protein phosphatases I | 0 | DIRECT |
Sulfolobus fructose-1,6-bisphosphatase-like | 0 | DIRECT |
Metallo-dependent phosphatases | 0 | DIRECT |
CRAL/TRIO N-terminal domain | 0 | DIRECT |
PP2C-like | 0 | DIRECT |
Rhodanese/Cell cycle control phosphatase | 0 | DIRECT |
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 0 | DIRECT |
SurE-like | 0 | DIRECT |
CYTH-like phosphatases | 0 | DIRECT |
HAD-like | 0 | DIRECT |
Bacterial GAP domain | 0 | DIRECT |
Fibronectin type III | 0 | DIRECT |
Purple acid phosphatase, N-terminal domain | 0 | DIRECT |
Immunoglobulin | 1.78e-16 | DIRECT |
Second domain of FERM | 0.00000000000003902 | DIRECT |
DEK C-terminal domain | 0.00000000000009823 | DIRECT |
Macro domain-like | 0.00000000003002 | DIRECT |
Ubiquitin-like | 0.000000001701 | DIRECT |
GTPase activation domain, GAP | 0.000000002805 | DIRECT |
NTF2-like | 0.000000007016 | DIRECT |
SH2 domain | 0.000000789 | DIRECT |
Chaperone J-domain | 0.000001639 | DIRECT |
PH domain-like | 0.000005818 | DIRECT |
Kelch motif | 0.00001395 | DIRECT |
CRAL/TRIO domain | 0.00002101 | DIRECT |
Non-globular alpha+beta subunits of globular proteins | 0.0002654 | DIRECT |
FYVE/PHD zinc finger | 0.0004377 | DIRECT |
PDZ domain-like | 0.0006815 | DIRECT |
TPR-like | 0.0009114 | DIRECT |
Carbonic anhydrase | 0.001344 | INHERITED FROM: Protein-tyrosine-phosphatase |
DNase I-like | 0.001393 | INHERITED FROM: Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase || Inositol-polyphosphate 5-phosphatase || Phosphoinositide 5-phosphatase |
SAM/Pointed domain | 0.002543 | INHERITED FROM: Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase |
AraD/HMP-PK domain-like | 0.002964 | INHERITED FROM: Acireductone synthase |
Starch-binding domain-like | 0.01087 | INHERITED FROM: Protein-tyrosine-phosphatase || Protein-serine/threonine phosphatase |
RNA-binding domain, RBD | 0.01683 | INHERITED FROM: Phosphoinositide 5-phosphatase |
DHH phosphoesterases | 0.02436 | INHERITED FROM: 3'(2'),5'-bisphosphate nucleotidase |
Thermostable phytase (3-phytase) | 0.03106 | INHERITED FROM: 3-phytase |
Alkaline phosphatase-like | 0.1139 | INHERITED FROM: Alkaline phosphatase |
PHP domain-like | 0.3358 | INHERITED FROM: 3',5'-nucleoside bisphosphate phosphatase || Histidinol-phosphatase |
Concanavalin A-like lectins/glucanases | 0.3572 | INHERITED FROM: Protein-tyrosine-phosphatase |
L domain-like | 0.6871 | INHERITED FROM: Protein-serine/threonine phosphatase |
UDP-Glycosyltransferase/glycogen phosphorylase | 1 | INHERITED FROM: Trehalose-phosphatase |
EF-hand | 1 | INHERITED FROM: Protein-serine/threonine phosphatase |
C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | INHERITED FROM: Protein-tyrosine-phosphatase || Phosphatidylinositol-3,4-bisphosphate 4-phosphatase || Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase |
Periplasmic binding protein-like II | 1 | INHERITED FROM: Alkaline phosphatase |
alpha/beta-Hydrolases | 1 | INHERITED FROM: Lipid-phosphate phosphatase |
DNA ligase/mRNA capping enzyme, catalytic domain | 1 | INHERITED FROM: Polynucleotide 5'-phosphatase |
P-loop containing nucleoside triphosphate hydrolases | 1 | INHERITED FROM: ADP-ribose 1''-phosphate phosphatase || Polynucleotide 5'-phosphatase || Fructose-2,6-bisphosphate 2-phosphatase || Polynucleotide 3'-phosphatase |
HD-domain/PDEase-like | 1 | INHERITED FROM: 5'-deoxynucleotidase |
DNA/RNA polymerases | 1 | INHERITED FROM: ADP-ribose 1''-phosphate phosphatase || Polynucleotide 5'-phosphatase |
Ribosomal protein S5 domain 2-like | 1 | INHERITED FROM: Histidinol-phosphatase |
S-adenosyl-L-methionine-dependent methyltransferases | 1 | INHERITED FROM: ADP-ribose 1''-phosphate phosphatase || Polynucleotide 5'-phosphatase |
ACT-like | 1 | INHERITED FROM: Phosphoserine phosphatase |
(show details)
Supra-domains annotated to this EC term (SPEC level: Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
56784,54427 56784 - HAD-like 54427 - NTF2-like | 0 | DIRECT |
53639,56784 53639 - AraD/HMP-PK domain-like 56784 - HAD-like | 0 | DIRECT |
52821,52799 52821 - Rhodanese/Cell cycle control phosphatase 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
52540,53254 52540 - P-loop containing nucleoside triphosphate hydrolases 53254 - Phosphoglycerate mutase-like | 0 | DIRECT |
56219,56219 56219 - DNase I-like 56219 - DNase I-like | 0 | DIRECT |
101908,56219 101908 - Putative isomerase YbhE 56219 - DNase I-like | 0 | DIRECT |
56784,52540 56784 - HAD-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
52087,52799 52087 - CRAL/TRIO domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
52799,56091 52799 - (Phosphotyrosine protein) phosphatases II 56091 - DNA ligase/mRNA capping enzyme, catalytic domain | 0 | DIRECT |
52799,52799 52799 - (Phosphotyrosine protein) phosphatases II 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
56568,47233 56568 - Non-globular alpha+beta subunits of globular proteins 47233 - Bacterial GAP domain | 0 | DIRECT |
48452,56300 48452 - TPR-like 56300 - Metallo-dependent phosphatases | 0 | DIRECT |
49899,48726 49899 - Concanavalin A-like lectins/glucanases 48726 - Immunoglobulin | 0 | DIRECT |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | DIRECT |
81324,52799 81324 - Voltage-gated potassium channels 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
51069,49265 51069 - Carbonic anhydrase 49265 - Fibronectin type III | 0 | DIRECT |
49363,56300 49363 - Purple acid phosphatase, N-terminal domain 56300 - Metallo-dependent phosphatases | 0 | DIRECT |
56300,47473 56300 - Metallo-dependent phosphatases 47473 - EF-hand | 0 | DIRECT |
52799,49562 52799 - (Phosphotyrosine protein) phosphatases II 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0 | DIRECT |
46938,52087 46938 - CRAL/TRIO N-terminal domain 52087 - CRAL/TRIO domain | 0 | DIRECT |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0 | DIRECT |
55154,56091 55154 - CYTH-like phosphatases 56091 - DNA ligase/mRNA capping enzyme, catalytic domain | 0 | DIRECT |
54211,54211 54211 - Ribosomal protein S5 domain 2-like 54211 - Ribosomal protein S5 domain 2-like | 0 | DIRECT |
47233,52799 47233 - Bacterial GAP domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
50156,52799 50156 - PDZ domain-like 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
56784,53474 56784 - HAD-like 53474 - alpha/beta-Hydrolases | 0 | DIRECT |
56784,56784 56784 - HAD-like 56784 - HAD-like | 0 | DIRECT |
55550,52799 55550 - SH2 domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
56300,56300 56300 - Metallo-dependent phosphatases 56300 - Metallo-dependent phosphatases | 0 | DIRECT |
56219,54928 56219 - DNase I-like 54928 - RNA-binding domain, RBD | 0 | DIRECT |
56300,55816 56300 - Metallo-dependent phosphatases 55816 - 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 0 | DIRECT |
56784,54211 56784 - HAD-like 54211 - Ribosomal protein S5 domain 2-like | 0 | DIRECT |
49452,52799 49452 - Starch-binding domain-like 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
81606,81601 81606 - PP2C-like 81601 - Protein serine/threonine phosphatase 2C, C-terminal domain | 0 | DIRECT |
54236,47031 54236 - Ubiquitin-like 47031 - Second domain of FERM | 0 | DIRECT |
109715,52799 109715 - DEK C-terminal domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
50729,52799 50729 - PH domain-like 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
54236,56784 54236 - Ubiquitin-like 56784 - HAD-like | 0 | DIRECT |
47031,50729 47031 - Second domain of FERM 50729 - PH domain-like | 0.00000000000000246 | DIRECT |
53335,52949 53335 - S-adenosyl-L-methionine-dependent methyltransferases 52949 - Macro domain-like | 0.00000000000001114 | DIRECT |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.0000001085 | DIRECT |
53756,56784 53756 - UDP-Glycosyltransferase/glycogen phosphorylase 56784 - HAD-like | 0.000001924 | DIRECT |
52058,52058 52058 - L domain-like 52058 - L domain-like | 0.0003289 | DIRECT |
55550,55550 55550 - SH2 domain 55550 - SH2 domain | 0.01125 | INHERITED FROM: Protein-tyrosine-phosphatase |
56091,50249 56091 - DNA ligase/mRNA capping enzyme, catalytic domain 50249 - Nucleic acid-binding proteins | 1 | INHERITED FROM: Polynucleotide 5'-phosphatase |
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
56784,54427 56784 - HAD-like 54427 - NTF2-like | 0 | Direct |
53639,56784 53639 - AraD/HMP-PK domain-like 56784 - HAD-like | 0 | Direct |
52821,52799 52821 - Rhodanese/Cell cycle control phosphatase 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
52540,53254 52540 - P-loop containing nucleoside triphosphate hydrolases 53254 - Phosphoglycerate mutase-like | 0 | Direct |
56219,56219 56219 - DNase I-like 56219 - DNase I-like | 0 | Direct |
101908,56219 101908 - Putative isomerase YbhE 56219 - DNase I-like | 0 | Direct |
56784,52540 56784 - HAD-like 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
52087,52799 52087 - CRAL/TRIO domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
52799,56091 52799 - (Phosphotyrosine protein) phosphatases II 56091 - DNA ligase/mRNA capping enzyme, catalytic domain | 0 | Direct |
52799,52799 52799 - (Phosphotyrosine protein) phosphatases II 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
56568,47233 56568 - Non-globular alpha+beta subunits of globular proteins 47233 - Bacterial GAP domain | 0 | Direct |
48452,56300 48452 - TPR-like 56300 - Metallo-dependent phosphatases | 0 | Direct |
49899,48726 49899 - Concanavalin A-like lectins/glucanases 48726 - Immunoglobulin | 0 | Direct |
49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | Direct |
81324,52799 81324 - Voltage-gated potassium channels 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
51069,49265 51069 - Carbonic anhydrase 49265 - Fibronectin type III | 0 | Direct |
49363,56300 49363 - Purple acid phosphatase, N-terminal domain 56300 - Metallo-dependent phosphatases | 0 | Direct |
56300,47473 56300 - Metallo-dependent phosphatases 47473 - EF-hand | 0 | Direct |
52799,49562 52799 - (Phosphotyrosine protein) phosphatases II 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0 | Direct |
46938,52087 46938 - CRAL/TRIO N-terminal domain 52087 - CRAL/TRIO domain | 0 | Direct |
48726,49265 48726 - Immunoglobulin 49265 - Fibronectin type III | 0 | Direct |
55154,56091 55154 - CYTH-like phosphatases 56091 - DNA ligase/mRNA capping enzyme, catalytic domain | 0 | Direct |
54211,54211 54211 - Ribosomal protein S5 domain 2-like 54211 - Ribosomal protein S5 domain 2-like | 0 | Direct |
47233,52799 47233 - Bacterial GAP domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
50156,52799 50156 - PDZ domain-like 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
56784,53474 56784 - HAD-like 53474 - alpha/beta-Hydrolases | 0 | Direct |
56784,56784 56784 - HAD-like 56784 - HAD-like | 0 | Direct |
55550,52799 55550 - SH2 domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
56300,56300 56300 - Metallo-dependent phosphatases 56300 - Metallo-dependent phosphatases | 0 | Direct |
56219,54928 56219 - DNase I-like 54928 - RNA-binding domain, RBD | 0 | Direct |
56300,55816 56300 - Metallo-dependent phosphatases 55816 - 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 0 | Direct |
56784,54211 56784 - HAD-like 54211 - Ribosomal protein S5 domain 2-like | 0 | Direct |
49452,52799 49452 - Starch-binding domain-like 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
81606,81601 81606 - PP2C-like 81601 - Protein serine/threonine phosphatase 2C, C-terminal domain | 0 | Direct |
54236,47031 54236 - Ubiquitin-like 47031 - Second domain of FERM | 0 | Direct |
109715,52799 109715 - DEK C-terminal domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
50729,52799 50729 - PH domain-like 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
54236,56784 54236 - Ubiquitin-like 56784 - HAD-like | 0 | Direct |
47031,50729 47031 - Second domain of FERM 50729 - PH domain-like | 0.00000000000000246 | Direct |
53335,52949 53335 - S-adenosyl-L-methionine-dependent methyltransferases 52949 - Macro domain-like | 0.00000000000001114 | Direct |
48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.0000001085 | Direct |
53756,56784 53756 - UDP-Glycosyltransferase/glycogen phosphorylase 56784 - HAD-like | 0.000001924 | Direct |
52058,52058 52058 - L domain-like 52058 - L domain-like | 0.0003289 | Direct |
55550,55550 55550 - SH2 domain 55550 - SH2 domain | 0.01125 | Inherited |
56091,50249 56091 - DNA ligase/mRNA capping enzyme, catalytic domain 50249 - Nucleic acid-binding proteins | 1 | Inherited |
(show details)
Supra-domains annotated to this EC term (SPEC level: Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49265,49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | DIRECT |
56784,54211,54211 56784 - HAD-like 54211 - Ribosomal protein S5 domain 2-like 54211 - Ribosomal protein S5 domain 2-like | 0 | DIRECT |
56568,47233,52799 56568 - Non-globular alpha+beta subunits of globular proteins 47233 - Bacterial GAP domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
48726,49265,49265 48726 - Immunoglobulin 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | DIRECT |
55550,55550,52799 55550 - SH2 domain 55550 - SH2 domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
49899,48726,49265 49899 - Concanavalin A-like lectins/glucanases 48726 - Immunoglobulin 49265 - Fibronectin type III | 0 | DIRECT |
54236,47031,50729 54236 - Ubiquitin-like 47031 - Second domain of FERM 50729 - PH domain-like | 0 | DIRECT |
52799,56091,50249 52799 - (Phosphotyrosine protein) phosphatases II 56091 - DNA ligase/mRNA capping enzyme, catalytic domain 50249 - Nucleic acid-binding proteins | 0 | DIRECT |
81324,52799,49562 81324 - Voltage-gated potassium channels 52799 - (Phosphotyrosine protein) phosphatases II 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0 | DIRECT |
46938,52087,52799 46938 - CRAL/TRIO N-terminal domain 52087 - CRAL/TRIO domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | DIRECT |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 7.073e-16 | DIRECT |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.000000005321 | DIRECT |
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49265,49265,49265 49265 - Fibronectin type III 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | Direct |
56784,54211,54211 56784 - HAD-like 54211 - Ribosomal protein S5 domain 2-like 54211 - Ribosomal protein S5 domain 2-like | 0 | Direct |
56568,47233,52799 56568 - Non-globular alpha+beta subunits of globular proteins 47233 - Bacterial GAP domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
48726,49265,49265 48726 - Immunoglobulin 49265 - Fibronectin type III 49265 - Fibronectin type III | 0 | Direct |
55550,55550,52799 55550 - SH2 domain 55550 - SH2 domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
49899,48726,49265 49899 - Concanavalin A-like lectins/glucanases 48726 - Immunoglobulin 49265 - Fibronectin type III | 0 | Direct |
54236,47031,50729 54236 - Ubiquitin-like 47031 - Second domain of FERM 50729 - PH domain-like | 0 | Direct |
52799,56091,50249 52799 - (Phosphotyrosine protein) phosphatases II 56091 - DNA ligase/mRNA capping enzyme, catalytic domain 50249 - Nucleic acid-binding proteins | 0 | Direct |
81324,52799,49562 81324 - Voltage-gated potassium channels 52799 - (Phosphotyrosine protein) phosphatases II 49562 - C2 domain (Calcium/lipid-binding domain, CaLB) | 0 | Direct |
46938,52087,52799 46938 - CRAL/TRIO N-terminal domain 52087 - CRAL/TRIO domain 52799 - (Phosphotyrosine protein) phosphatases II | 0 | Direct |
48726,48726,49265 48726 - Immunoglobulin 48726 - Immunoglobulin 49265 - Fibronectin type III | 7.073e-16 | Direct |
48726,48726,48726 48726 - Immunoglobulin 48726 - Immunoglobulin 48726 - Immunoglobulin | 0.000000005321 | Direct |
Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
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