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  Home > Phenotype Ontology > Ammonia-lyases

Enzyme Commission (EC): Ammonia-lyases

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: EC Hierarchy (from IntEnz release 70)

Shortest distance to current term (+ for parents, - for children) EC term [EC ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   root [root] <7>
+ + 2:   Lyases [4] <8>(182|225) (183|104|38)
+ 1:   Carbon-nitrogen lyases [4.3] <4>(19|21) (19|8|2)
0:   Ammonia-lyases [4.3.1] <32>(10|11) (10|5|2)
- 1:   3,4-dihydroxyphenylalanine reductive deaminase [4.3.1.22](0|0) (0|0|0)
- 1:   3-aminobutyryl-CoA ammonia-lyase [4.3.1.14](0|0) (0|0|0)
- 1:   7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [4.3.1.32](1|1) (1|0|0)
- 1:   Aspartate ammonia-lyase [4.3.1.1](0|1) (0|0|0)
- 1:   Beta-alanyl-CoA ammonia-lyase [4.3.1.6](0|0) (0|0|0)
- 1:   Carbamoyl-serine ammonia-lyase [4.3.1.13](0|0) (0|0|0)
- 1:   D-glucosaminate-6-phosphate ammonia lyase [4.3.1.29](0|0) (0|0|0)
- 1:   D-serine ammonia-lyase [4.3.1.18](1|1) (1|0|0)
- 1:   Deleted entry [4.3.1.11](0|0) (0|0|0)
- 1:   Diaminopropionate ammonia-lyase [4.3.1.15](0|0) (0|0|0)
- 1:   Erythro-3-hydroxy-L-aspartate ammonia-lyase [4.3.1.20](0|0) (0|0|0)
- 1:   Ethanolamine ammonia-lyase [4.3.1.7](0|0) (0|0|0)
- 1:   Formimidoyltetrahydrofolate cyclodeaminase [4.3.1.4](2|2) (2|2|1)
- 1:   Glucosaminate ammonia-lyase [4.3.1.9](0|0) (0|0|0)
- 1:   Histidine ammonia-lyase [4.3.1.3](1|1) (1|0|0)
- 1:   L-lysine cyclodeaminase [4.3.1.28](0|0) (0|0|0)
- 1:   L-serine ammonia-lyase [4.3.1.17](2|2) (2|0|0)
- 1:   L-tryptophan ammonia lyase [4.3.1.31](0|0) (0|0|0)
- 1:   Methylaspartate ammonia-lyase [4.3.1.2](2|2) (2|1|0)
- 1:   Ornithine cyclodeaminase [4.3.1.12](1|1) (1|0|0)
- 1:   Phenylalanine ammonia-lyase [4.3.1.24](1|1) (1|0|0)
- 1:   Phenylalanine/tyrosine ammonia-lyase [4.3.1.25](0|0) (0|0|0)
- 1:   Serine-sulfate ammonia-lyase [4.3.1.10](0|0) (0|0|0)
- 1:   Threo-3-hydroxy-D-aspartate ammonia-lyase [4.3.1.27](0|0) (0|0|0)
- 1:   Threo-3-hydroxy-L-aspartate ammonia-lyase [4.3.1.16](0|0) (0|0|0)
- 1:   Threonine ammonia-lyase [4.3.1.19](2|2) (2|2|1)
- 1:   Transferred entry: 1.21.98.2 [4.3.1.26](0|0) (0|0|0)
- 1:   Transferred entry: 2.5.1.61 [4.3.1.8](0|0) (0|0|0)
- 1:   Transferred entry: 4.3.1.23, 4.3.1.24 and 4.3.1.25 [4.3.1.5](0|0) (0|0|0)
- 1:   Transferred entry: 4.3.1.9 [4.3.1.21](0|0) (0|0|0)
- 1:   Tyrosine ammonia-lyase [4.3.1.23](0|0) (0|0|0)
- 1:   dTDP-4-amino-4,6-dideoxy-D-glucose ammonia-lyase [4.3.1.30](0|0) (0|0|0)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Methenyltetrahydrofolate cyclohydrolase-like0Direct
L-aspartase-like0Direct
ACT-like0Direct
Serine metabolism enzymes domain0Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0Direct
Formiminotransferase domain of formiminotransferase-cyclodeaminase.0Direct
Radical SAM enzymes0.00000000042Direct
Enolase N-terminal domain-like0.04391Inherited
Enolase C-terminal domain-like0.0517Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Serine dehydratase beta chain-like0Direct
HAL/PAL-like0Direct
Formiminotransferase domain of formiminotransferase-cyclodeaminase.0Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0Direct
Methenyltetrahydrofolate cyclohydrolase-like0Direct
Allosteric threonine deaminase C-terminal domain0Direct
Ornithine cyclodeaminase-like0.000000000000002188Direct
D-glucarate dehydratase-like0.00001208Direct
Enolase N-terminal domain-like0.03513Inherited
Biotin synthase0.09957Inherited
L-aspartase/fumarase1Inherited

Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Methenyltetrahydrofolate cyclohydrolase-like0Direct
L-aspartase-like0Direct
Formiminotransferase domain of formiminotransferase-cyclodeaminase.0Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0Direct
Serine metabolism enzymes domain0Direct
ACT-like0Direct
Radical SAM enzymes0.0000000003108Direct
Enolase N-terminal domain-like0.03781Inherited
Enolase C-terminal domain-like0.04468Inherited
NAD(P)-binding Rossmann-fold domains1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
53686,55021
  • 53686 - Tryptophan synthase beta subunit-like PLP-dependent enzymes
  • 55021 - ACT-like
    		• 0Direct
    55116,101262
  • 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase.
  • 101262 - Methenyltetrahydrofolate cyclohydrolase-like
    		• 0Direct
    55116,55116
  • 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase.
  • 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase.
    		• 0Direct
    55021,55021
  • 55021 - ACT-like
  • 55021 - ACT-like
    		• 0.000001079Direct
    54826,51604
  • 54826 - Enolase N-terminal domain-like
  • 51604 - Enolase C-terminal domain-like
    		• 0.03649Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    53686,55021,55021
  • 53686 - Tryptophan synthase beta subunit-like PLP-dependent enzymes
  • 55021 - ACT-like
  • 55021 - ACT-like
    		• 0Direct
    55116,55116,101262
  • 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase.
  • 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase.
  • 101262 - Methenyltetrahydrofolate cyclohydrolase-like
    		• 0Direct

    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)
    Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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