SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Enzyme Commission (EC): Forming phosphoric ester bonds

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: EC Hierarchy (from IntEnz release 70)

Shortest distance to current term (+ for parents, - for children) EC term [EC ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   root [root] <7>
+ + 2:   Ligases [6] <6>(98|123) (97|115|71)
+ 1:   Forming phosphoric ester bonds [6.5] <1>(10|10) (10|12|10)
0:   Forming phosphoric ester bonds [6.5.1] <8>(10|10) (10|12|10)
- 1:   3'-phosphate/5'-hydroxy nucleic acid ligase [6.5.1.8](3|1) (3|3|2)
- 1:   DNA ligase (ATP or NAD(+)) [6.5.1.6](1|1) (1|1|1)
- 1:   DNA ligase (ATP) [6.5.1.1](1|2) (1|3|3)
- 1:   DNA ligase (ATP, ADP or GTP) [6.5.1.7](1|2) (1|1|1)
- 1:   DNA ligase (NAD(+)) [6.5.1.2](4|4) (4|4|4)
- 1:   RNA 3'-terminal-phosphate cyclase (ATP) [6.5.1.4](2|2) (2|2|1)
- 1:   RNA 3'-terminal-phosphate cyclase (GTP) [6.5.1.5](0|0) (0|0|0)
- 1:   RNA ligase (ATP) [6.5.1.3](0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
EPT/RTPC-like1Inherited
Nucleic acid-binding proteins1Inherited
RuvA domain 2-like1Inherited
Hypothetical protein PH16021Inherited
RNA 3'-terminal phosphate cyclase, RPTC, insert domain1Inherited
Homing endonucleases1Inherited
BRCT domain1Inherited
ATP-dependent DNA ligase DNA-binding domain1Inherited
Hedgehog/intein (Hint) domain1Inherited
DNA ligase/mRNA capping enzyme, catalytic domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RNA 3'-terminal phosphate cyclase, RPTC, insert domain1Inherited
RNA ligase1Inherited
DNA ligase/mRNA capping enzyme postcatalytic domain1Inherited
RNA 3'-terminal phosphate cyclase, RPTC1Inherited
Adenylation domain of NAD+-dependent DNA ligase1Inherited
DNA ligase1Inherited
Hypothetical protein PH16021Inherited
NAD+-dependent DNA ligase, domain 31Inherited
ATP-dependent DNA ligase catalytic domain1Inherited
ATP-dependent DNA ligase DNA-binding domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
BRCT domain1Inherited
Hedgehog/intein (Hint) domain1Inherited
RNA 3'-terminal phosphate cyclase, RPTC, insert domain1Inherited
Hypothetical protein PH16021Inherited
Homing endonucleases1Inherited
ATP-dependent DNA ligase DNA-binding domain1Inherited
DNA ligase/mRNA capping enzyme, catalytic domain1Inherited
EPT/RTPC-like1Inherited
Nucleic acid-binding proteins1Inherited
RuvA domain 2-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56091,50249
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 1Inherited
    47781,52113
  • 47781 - RuvA domain 2-like
  • 52113 - BRCT domain
  • 1Inherited
    50249,52113
  • 50249 - Nucleic acid-binding proteins
  • 52113 - BRCT domain
  • 1Inherited
    55205,55205
  • 55205 - EPT/RTPC-like
  • 55205 - EPT/RTPC-like
  • 1Inherited
    55608,103365
  • 55608 - Homing endonucleases
  • 103365 - Hypothetical protein PH1602
  • 1Inherited
    52113,52113
  • 52113 - BRCT domain
  • 52113 - BRCT domain
  • 1Inherited
    103365,55608
  • 103365 - Hypothetical protein PH1602
  • 55608 - Homing endonucleases
  • 1Inherited
    117018,56091
  • 117018 - ATP-dependent DNA ligase DNA-binding domain
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 1Inherited
    51294,103365
  • 51294 - Hedgehog/intein (Hint) domain
  • 103365 - Hypothetical protein PH1602
  • 1Inherited
    47781,47781
  • 47781 - RuvA domain 2-like
  • 47781 - RuvA domain 2-like
  • 1Inherited
    50249,47781
  • 50249 - Nucleic acid-binding proteins
  • 47781 - RuvA domain 2-like
  • 1Inherited
    55205,52913
  • 55205 - EPT/RTPC-like
  • 52913 - RNA 3'-terminal phosphate cyclase, RPTC, insert domain
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    56091,50249,47781
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 47781 - RuvA domain 2-like
  • 1Inherited
    47781,47781,52113
  • 47781 - RuvA domain 2-like
  • 47781 - RuvA domain 2-like
  • 52113 - BRCT domain
  • 1Inherited
    55205,55205,52913
  • 55205 - EPT/RTPC-like
  • 55205 - EPT/RTPC-like
  • 52913 - RNA 3'-terminal phosphate cyclase, RPTC, insert domain
  • 1Inherited
    50249,52113,52113
  • 50249 - Nucleic acid-binding proteins
  • 52113 - BRCT domain
  • 52113 - BRCT domain
  • 1Inherited
    56091,50249,52113
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 52113 - BRCT domain
  • 1Inherited
    51294,103365,55608
  • 51294 - Hedgehog/intein (Hint) domain
  • 103365 - Hypothetical protein PH1602
  • 55608 - Homing endonucleases
  • 1Inherited
    117018,56091,50249
  • 117018 - ATP-dependent DNA ligase DNA-binding domain
  • 56091 - DNA ligase/mRNA capping enzyme, catalytic domain
  • 50249 - Nucleic acid-binding proteins
  • 1Inherited
    50249,47781,47781
  • 50249 - Nucleic acid-binding proteins
  • 47781 - RuvA domain 2-like
  • 47781 - RuvA domain 2-like
  • 1Inherited
    103365,55608,103365
  • 103365 - Hypothetical protein PH1602
  • 55608 - Homing endonucleases
  • 103365 - Hypothetical protein PH1602
  • 1Inherited
    50249,47781,52113
  • 50249 - Nucleic acid-binding proteins
  • 47781 - RuvA domain 2-like
  • 52113 - BRCT domain
  • 1Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)