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Fly Anatomy (FA): anterior-posterior subdivision of organism
(show info)
Phenotype Ontology
Like Gene Ontology (GO), phenotypy ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Phenotype ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology (DO) DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology (HP) HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology (MP) MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology (WP) WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology (YP) Based on YP which is the major contributor to the Ascomycete phenotype ontology, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology (FP) FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology (FA) FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology (ZA) ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology (XA) XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology (AP) As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology (EC) Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- DrugBank ATC (DB) Ontology (DB) In the Anatomical Therapeutic Chemical (ATC) classification system, drugs are classified in groups at five different levels according to the organ or system (1st level, anatomical main group) on which they act and their therapeutic (2nd level, therapeutic subgroup), pharmacological (3rd level, pharmacological subgroup) and chemical properties (4th level, chemical subgroup; 5th level, chemical substance). Only drugs in DrugBank are considered.
- UniProtKB KeyWords (KW) Ontology (KW) Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- UniProtKB UniPathway (UP) Ontology (UP) UP is a fully manually curated resource for the representation and annotation of metabolic pathways, being used as controlled vocabulary for pathway annotation in UniProtKB.
Structural Domain Phenotype Ontology and its Annotations
Structural Classification of Proteins (SCOP) classifies evolutionary-related domains into Superfamily level and Family level. Using the phenotype ontologies above, we have generated the domain-centric phenotype annotations, and further identified those phenotype terms which are the most informative to annotate SCOP domains. Promisingly, domain-centric phenotypic annotations can serve as an alternative starting point to explore genotype-phenotype relationships. We provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Structural Domain Disease Ontology (DO) Ontology (SDDO) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DO.txt, and the corresponding ontology:SDDO.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Human Phenotype (HP) Ontology (SDHP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2HP.txt, and the corresponding ontology:SDHP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Mouse Phenotype (MP) Ontology (SDMP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2MP.txt, and the corresponding ontology:SDMP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Worm Phenotype (WP) Ontology (SDWP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2WP.txt, and the corresponding ontology:SDWP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Yeast Phenotype (YP) Ontology (SDYP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2YP.txt, and the corresponding ontology:SDYP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Phenotype (FP) Ontology (SDFP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FP.txt, and the corresponding ontology:SDFP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Fly Anatomy (FA) Ontology (SDFA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2FA.txt, and the corresponding ontology:SDFA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Zebrafish Anatomy (ZA) Ontology (SDZA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2ZA.txt, and the corresponding ontology:SDZA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Xenopus Anatomy (XA) Ontology (SDXA) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2XA.txt, and the corresponding ontology:SDXA.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Arabidopsis Plant Ontology (AP) Ontology (SDAP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2AP.txt, and the corresponding ontology:SDAP.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain Enzyme Commission (EC) Ontology (SDEC) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2EC.txt, and the corresponding ontology:SDEC.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain DrugBank ATC (DB) Ontology (SDDB) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2DB.txt, and the corresponding ontology:SDDB.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB KeyWords (KW) Ontology (SDKW) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2KW.txt, and the corresponding ontology:SDKW.txt) and mysql tables (Domain2PO.sql.gz).
- Structural Domain UniProtKB UniPathway (UP) Ontology (SDUP) and its Annotations: For details, please visit Document: PO annotation for SCOP domains, wherein Data Availability contains parsable flat files (the annotation:Domain2UP.txt, and the corresponding ontology:SDUP.txt) and mysql tables (Domain2PO.sql.gz).
Supra-domain Phenotype Ontology and its Annotations
Although domain-centric annotations hold great promise in describing phenotypic nature of independent domains, most domains themselves may not just work alone. In multi-domain proteins, they may be combined together to form distinct domain architectures. The recombination of the existing domains is considered as one of major driving forces for phenotypic diversificaation. As an extension, we have also generated supra-domain phenotype ontology and its annotations. Compared to domain-centric phenotype ontology and annotations (SCOP domains at the Superfamily level and Family level), this version focuses on supra-domains and individual SCOP domains ONLY at the Superfamily level. Besides, in terms of individual superfamilies, their annotations from the domain-centric version may be different from those from supra-domains version. Depending on your focus, the former should be used for the consideration of both the Superfamily level and Family level, otherwise the latter should be used if you are interested in domain combinations. Also, we provide several relevant files for the download, including the annotation and the corresponding ontology for each phenotype ontology.
- Supra-domain Domain Disease Ontology (DO) Ontology (SPDO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DO.txt, and the corresponding ontology:SPDO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Human Phenotype (HP) Ontology (SPHO) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2HP.txt, and the corresponding ontology:SPHO.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Mouse Phenotype (MP) Ontology (SPMP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2MP.txt, and the corresponding ontology:SPMP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Worm Phenotype (WP) Ontology (SPWP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2WP.txt, and the corresponding ontology:SPWP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Yeast Phenotype (YP) Ontology (SPYP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2YP.txt, and the corresponding ontology:SPYP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Phenotype (FP) Ontology (SPFP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FP.txt, and the corresponding ontology:SPFP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Fly Anatomy (FA) Ontology (SPFA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2FA.txt, and the corresponding ontology:SPFA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Zebrafish Anatomy (ZA) Ontology (SPZA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2ZA.txt, and the corresponding ontology:SPZA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Xenopus Anatomy (XA) Ontology (SPXA) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2XA.txt, and the corresponding ontology:SPXA.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Arabidopsis Plant Ontology (AP) Ontology (SPAP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2AP.txt, and the corresponding ontology:SPAP.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain Enzyme Commission (EC) Ontology (SPEC) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2EC.txt, and the corresponding ontology:SPEC.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain DrugBank ATC (DB) Ontology (SPDB) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2DB.txt, and the corresponding ontology:SPDB.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB KeyWords (KW) Ontology (SPKW) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2KW.txt, and the corresponding ontology:SPKW.txt) and mysql tables (SP2PO.sql.gz).
- Supra-domain Domain UniProtKB UniPathway (UP) Ontology (SPUP) and its Annotations: For details, please visit Document: PO annotation for Supra-domains, wherein Data Availability contains parsable flat files (the annotation:SP2UP.txt, and the corresponding ontology:SPUP.txt) and mysql tables (SP2PO.sql.gz).
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Root: FA Hierarchy (fly anatomy from FlyBase anatomy ontology)
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Superfamily(show details)
Superfamily domains annotated to this FA term (Not in SDFA)
Highlighted in gray are those with FDR_all>0.001
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Family(show details)
Family domains annotated to this FA term (Not in SDFA)
Highlighted in gray are those with FDR_all>0.001
| SCOP term | FDR (all) | Annotation (direct or inherited) |
| Myb/SANT domain | 1 | INHERITED FROM: mesothoracic segment || adult external thorax || adult thorax || tagma || adult segment || wing vein || adult tagma || adult mesothoracic segment || thorax || thoracic segment || segment || adult thoracic segment |
| EGF-type module | 1 | INHERITED FROM: adult antennal segment || wing blade || adult external head |
| RNase III catalytic domain-like | 1 | INHERITED FROM: tagma || adult segment || adult tagma || segment |
| Ngr ectodomain-like | 1 | INHERITED FROM: intersegmental nerve branch ISNb of A1-7 || abdominal intersegmental nerve || intersegmental nerve of A1-7 |
| Laminin G-like module | 1 | INHERITED FROM: photoreceptor cell R4 || procephalic segment |
| ets domain | 1 | INHERITED FROM: tagma || segment |
| FHA domain | 1 | INHERITED FROM: tagma |
| Paired domain | 1 | INHERITED FROM: abdominal 2 ventral denticle belt || abdominal 4 ventral denticle belt || abdominal 8 ventral denticle belt || tagma || abdominal 6 ventral denticle belt || larval abdominal segment A2-7 || segment |
| BC ATP-binding domain-like | 1 | INHERITED FROM: mesothoracic segment || tagma || thorax || thoracic segment || segment |
| Ubiquitin carboxyl-terminal hydrolase, UCH | 1 | INHERITED FROM: tagma || adult tagma |
| Third domain of FERM | 1 | INHERITED FROM: tagma || ommatidium || adult head |
| p120GAP domain-like | 1 | INHERITED FROM: head || tagma || adult segment || adult tagma || segment || adult head |
| Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 1 | INHERITED FROM: tagma || adult tagma |
| G proteins | 1 | INHERITED FROM: wing hair |
| Rel/Dorsal transcription factors, DNA-binding domain | 1 | INHERITED FROM: mesothoracic segment || adult external thorax || adult thorax || mesothoracic tergum || tagma || adult segment || adult tagma || adult mesothoracic segment || thorax || thoracic segment || tergum || segment || dorsal mesothorax || adult external mesothorax || adult thoracic segment |
| SH2 domain | 1 | INHERITED FROM: adult segment || ommatidium || photoreceptor cell R7 || head sensillum |
| SAM (sterile alpha motif) domain | 1 | INHERITED FROM: adult metathoracic segment || prothoracic leg || mesothoracic leg || adult abdominal segment 4 || metatarsus || sex comb || metatarsus of male prothoracic leg || prothoracic tarsal segment || prothoracic metatarsus || adult prothoracic segment |
| First domain of FERM | 1 | INHERITED FROM: tagma |
| Growth factor receptor domain | 1 | INHERITED FROM: ocellus || ocellar triangle || tibia |
| Fibronectin type III | 1 | INHERITED FROM: lobe system of adult mushroom body || larval tagma || LNv neuron || LN period neuron || larval abdomen || s-LNv neuron || procephalic segment |
| A DNA-binding domain in eukaryotic transcription factors | 1 | INHERITED FROM: mesothoracic segment || adult external thorax || adult thorax || tagma || adult segment || adult tagma || adult mesothoracic segment || wing || thorax || thoracic segment || segment || adult thoracic segment |
| Multidrug efflux transporter AcrB transmembrane domain | 1 | INHERITED FROM: head || tagma |
| Choline/Carnitine O-acyltransferase | 1 | INHERITED FROM: skeletal muscle of mesothorax || skeletal muscle of thorax || flight muscle |
| Dachshund-homology domain | 1 | INHERITED FROM: tagma || adult segment || adult tagma || segment |
| Fibroblast growth factors (FGF) | 1 | INHERITED FROM: abdomen || abdominal segment || tagma || segment |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 1 | INHERITED FROM: tagma || segment |
| N-acetyl transferase, NAT | 1 | INHERITED FROM: tagma |
| Nuclear receptor ligand-binding domain | 1 | INHERITED FROM: mushroom body gamma-lobe || protocerebrum || procephalic segment |
| Frizzled cysteine-rich domain | 1 | INHERITED FROM: eye || mesothoracic segment || adult external thorax || adult thorax || adult head sensillum || head || tagma || adult segment || retina || adult tagma || adult mesothoracic segment || head segment || eye photoreceptor cell || ommatidium || wing || adult head segment || thorax || thoracic segment || leg || segment || head sensillum || adult procephalic segment || adult head || procephalic segment || wing margin || adult thoracic segment |
| Group II chaperonin (CCT, TRIC), intermediate domain | 1 | INHERITED FROM: head || tagma || adult tagma || adult head |
| SMAD MH1 domain | 1 | INHERITED FROM: larval segment || mesothoracic segment || abdomen || wing blade || adult external thorax || larval tagma || adult thorax || abdominal segment || tagma || adult segment || wing vein || larval thoracic segment || adult tagma || dorsal thoracic disc || adult mesothoracic segment || larval mesothoracic segment || wing || wing disc || thorax || thoracic segment || segment || adult thoracic segment || larval thorax |
| Class I glutamine amidotransferases (GAT) | 1 | INHERITED FROM: tagma || adult segment || adult tagma || segment |
| Ubiquitin activating enzymes (UBA) | 1 | INHERITED FROM: larval segment || larval tagma || head || tagma || segment |
| HMG-box | 1 | INHERITED FROM: adult external thorax || adult thorax || adult mesothoracic segment || wing || adult thoracic segment |
| HLH, helix-loop-helix DNA-binding domain | 1 | INHERITED FROM: mesothoracic metatarsus || tagma || anterior orbital bristle || third segment of antenna || 5-6I of thorax |
| VHS domain | 1 | INHERITED FROM: eye || head || tagma || adult tagma || adult head |
| ARID domain | 1 | INHERITED FROM: tagma || adult segment || adult tagma || segment |
| Cytochrome P450 | 1 | INHERITED FROM: embryonic head |
| Cadherin | 1 | INHERITED FROM: wing hair || outer photoreceptor cell || photoreceptor cell R4 |
| Protein kinases, catalytic subunit | 1 | INHERITED FROM: photoreceptor cell R8 of pale ommatidium |
| SMAD domain | 1 | INHERITED FROM: wing blade || abdominal segment || wing vein || larval thoracic segment || dorsal thoracic disc || larval mesothoracic segment || wing disc || larval thorax |
| ZZ domain | 1 | INHERITED FROM: skeletal muscle of mesothorax || tagma || adult segment || adult tagma || indirect flight muscle || skeletal muscle of thorax || thorax || segment || flight muscle |
| PLC-like (P variant) | 1 | INHERITED FROM: mesothoracic tergum |
| Classic zinc finger, C2H2 | 1 | INHERITED FROM: adult thorax || adult segment || adult tagma || adult mesothoracic segment || embryonic/larval head sensillum || thorax || segment |
| Diacylglycerol kinase-like | 1 | INHERITED FROM: eye || adult head sensillum || head || tagma || retina || adult tagma || ommatidium || head sensillum || adult head |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 1 | INHERITED FROM: mesothoracic tergum || tagma || adult tagma || tergum || dorsal mesothorax || adult external mesothorax |
| Plexin repeat | 1 | INHERITED FROM: abdomen || abdominal segment || larval abdominal segment || larval abdomen || abdominal nerve |
| BTB/POZ domain | 1 | INHERITED FROM: adult antennal segment || adult abdominal segment || prothoracic tarsal segment |
| Extracellular domain of cell surface receptors | 1 | INHERITED FROM: larval segment || adult external thorax || larval tagma || adult thorax || adult cerebral ganglion || tarsal segment || tagma || adult segment || wing vein || adult tagma || adult optic lobe || thorax || thoracic segment || adult protocerebrum || leg || segment || adult labral segment || adult thoracic segment |
| BC N-terminal domain-like | 1 | INHERITED FROM: mesothoracic segment || tagma || thorax || thoracic segment || segment |
| Histone deacetylase, HDAC | 1 | INHERITED FROM: tagma || adult tagma |
| Transforming growth factor (TGF)-beta | 1 | INHERITED FROM: embryonic/larval posterior spiracle || stigmatophore |
| Sema domain | 1 | INHERITED FROM: larval segment || abdomen || larval tagma || abdominal segment || larval abdominal segment || tagma || abdominal segmental nerve || larval abdomen || segment || abdominal nerve |
| Hairy Orange domain | 1 | INHERITED FROM: tagma || segment |
| Cysteine-rich DNA binding domain, (DM domain) | 1 | INHERITED FROM: mesothoracic segment || adult external thorax || adult thorax || tagma || adult segment || adult tagma || adult mesothoracic segment || thorax || thoracic segment || segment || adult thoracic segment |
| Laminin-type module | 1 | INHERITED FROM: mesothoracic segment || adult external thorax || adult thorax || tagma || adult segment || adult tagma || adult mesothoracic segment || wing || thorax || thoracic segment || segment || adult thoracic segment |
| POU-specific domain | 1 | INHERITED FROM: adult antennal segment || adult cerebral ganglion || larval abdominal segment || larval abdominal segment A1-7 || head || tagma || adult segment || deutocerebrum || adult tagma || adult central brain || antennal sense organ || larval abdomen || larval abdominal segment A2-7 || segment || adult cerebrum || adult procephalic segment || antennal segment || procephalic segment || adult brain || adult antennal lobe glomerulus |
| Rhomboid-like | 1 | INHERITED FROM: mesothoracic segment || wing blade || adult thorax || tagma || adult segment || wing vein || adult tagma || adult mesothoracic segment || thorax || thoracic segment || segment || adult thoracic segment |
| Chromo barrel domain | 1 | INHERITED FROM: tagma |
| Smc hinge domain | 1 | INHERITED FROM: tagma |
| SAP domain | 1 | INHERITED FROM: head || tagma || adult tagma || adult head |
| Integrin domains | 1 | INHERITED FROM: eye || mesothoracic segment || wing blade || adult external thorax || adult thorax || head || tagma || adult segment || retina || adult tagma || adult mesothoracic segment || wing || thorax || thoracic segment || segment || adult head || adult thoracic segment |
| Pepsin-like | 1 | INHERITED FROM: tagma || adult tagma |
| I set domains | 1 | INHERITED FROM: lobe system of adult mushroom body || adult cerebral ganglion || LNv neuron || head segment || larval abdomen || s-LNv neuron || adult head segment || procephalic segment || adult brain |
| Cell cycle control phosphatase, catalytic domain | 1 | INHERITED FROM: mesothoracic segment || adult external thorax || adult thorax || tagma || adult segment || adult tagma || adult mesothoracic segment || thorax || thoracic segment || segment || adult thoracic segment |
| Group II chaperonin (CCT, TRIC), ATPase domain | 1 | INHERITED FROM: head || tagma || adult tagma || adult head |
| Group II chaperonin (CCT, TRIC), apical domain | 1 | INHERITED FROM: head || tagma || adult tagma || adult head |
| cAMP-binding domain | 1 | INHERITED FROM: tagma || segment |
| Second domain of FERM | 1 | INHERITED FROM: tagma || head bristle || adult head |
| Arrestin/Vps26-like | 1 | INHERITED FROM: tagma || adult tagma |
| Ubiquitin carboxyl-terminal hydrolase UCH-L | 1 | INHERITED FROM: tagma || adult tagma |
| Phoshoinositide 3-kinase (PI3K) helical domain | 1 | INHERITED FROM: tagma || segment |
| Histone lysine methyltransferases | 1 | INHERITED FROM: adult metathoracic segment || dorsal thoracic disc || metathoracic leg || haltere |
| Nuclear receptor | 1 | INHERITED FROM: mushroom body gamma-lobe || larval abdominal neuromere || abdominal neuromere |
| Homeodomain | 1 | INHERITED FROM: larval segment || embryonic segment || embryonic supraesophageal neuromere || pretarsus || embryonic head || abdomen || maxillary palpus || female terminalia || larval tagma || mesothoracic tergum || dorsal margin photoreceptor || longitudinal vein || larval prothoracic segment || abdominal segment || embryonic mesothoracic segment || embryonic thoracic segment || thoracic neuroblast || embryonic tagma || tagma || tritocerebrum || adult segment || A1-7 ventral acute muscle 1 || larval head || alula || pseudotrachea || intercalary segment || wing hinge || embryonic protocerebrum || embryonic/larval supraesophageal ganglion || larval metathoracic segment || adult external head || segment of leg || T1 beard || dorsal margin ommatidium || gnathal segment || larval head segment || larval abdomen || embryonic thorax || adult gnathal segment || proboscis || segment || distiproboscis || embryonic prothoracic segment || metathoracic ventral denticle belt || head bristle || antennal lobe glomerulus VA1v || mouthpart || dorsal rim area || parasegment || embryonic/larval labial organ || antennal segment || basiproboscis || head capsule || terminal organ || metathoracic segment || embryonic head segment |
| Calponin-homology domain, CH-domain | 1 | INHERITED FROM: abdominal segmental nerve || indirect flight muscle || flight muscle |
| MIR domain | 1 | INHERITED FROM: tagma |
| SCOP term | FDR (all) | Annotation (direct or inherited) |
| Myb/SANT domain | 1 | Inherited |
| EGF-type module | 1 | Inherited |
| RNase III catalytic domain-like | 1 | Inherited |
| Ngr ectodomain-like | 1 | Inherited |
| Laminin G-like module | 1 | Inherited |
| ets domain | 1 | Inherited |
| FHA domain | 1 | Inherited |
| Paired domain | 1 | Inherited |
| BC ATP-binding domain-like | 1 | Inherited |
| Ubiquitin carboxyl-terminal hydrolase, UCH | 1 | Inherited |
| Third domain of FERM | 1 | Inherited |
| p120GAP domain-like | 1 | Inherited |
| Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 1 | Inherited |
| G proteins | 1 | Inherited |
| Rel/Dorsal transcription factors, DNA-binding domain | 1 | Inherited |
| SH2 domain | 1 | Inherited |
| SAM (sterile alpha motif) domain | 1 | Inherited |
| First domain of FERM | 1 | Inherited |
| Growth factor receptor domain | 1 | Inherited |
| Fibronectin type III | 1 | Inherited |
| A DNA-binding domain in eukaryotic transcription factors | 1 | Inherited |
| Multidrug efflux transporter AcrB transmembrane domain | 1 | Inherited |
| Choline/Carnitine O-acyltransferase | 1 | Inherited |
| Dachshund-homology domain | 1 | Inherited |
| Fibroblast growth factors (FGF) | 1 | Inherited |
| Phoshoinositide 3-kinase (PI3K), catalytic domain | 1 | Inherited |
| N-acetyl transferase, NAT | 1 | Inherited |
| Nuclear receptor ligand-binding domain | 1 | Inherited |
| Frizzled cysteine-rich domain | 1 | Inherited |
| Group II chaperonin (CCT, TRIC), intermediate domain | 1 | Inherited |
| SMAD MH1 domain | 1 | Inherited |
| Class I glutamine amidotransferases (GAT) | 1 | Inherited |
| Ubiquitin activating enzymes (UBA) | 1 | Inherited |
| HMG-box | 1 | Inherited |
| HLH, helix-loop-helix DNA-binding domain | 1 | Inherited |
| VHS domain | 1 | Inherited |
| ARID domain | 1 | Inherited |
| Cytochrome P450 | 1 | Inherited |
| Cadherin | 1 | Inherited |
| Protein kinases, catalytic subunit | 1 | Inherited |
| SMAD domain | 1 | Inherited |
| ZZ domain | 1 | Inherited |
| PLC-like (P variant) | 1 | Inherited |
| Classic zinc finger, C2H2 | 1 | Inherited |
| Diacylglycerol kinase-like | 1 | Inherited |
| NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain | 1 | Inherited |
| Plexin repeat | 1 | Inherited |
| BTB/POZ domain | 1 | Inherited |
| Extracellular domain of cell surface receptors | 1 | Inherited |
| BC N-terminal domain-like | 1 | Inherited |
| Histone deacetylase, HDAC | 1 | Inherited |
| Transforming growth factor (TGF)-beta | 1 | Inherited |
| Sema domain | 1 | Inherited |
| Hairy Orange domain | 1 | Inherited |
| Cysteine-rich DNA binding domain, (DM domain) | 1 | Inherited |
| Laminin-type module | 1 | Inherited |
| POU-specific domain | 1 | Inherited |
| Rhomboid-like | 1 | Inherited |
| Chromo barrel domain | 1 | Inherited |
| Smc hinge domain | 1 | Inherited |
| SAP domain | 1 | Inherited |
| Integrin domains | 1 | Inherited |
| Pepsin-like | 1 | Inherited |
| I set domains | 1 | Inherited |
| Cell cycle control phosphatase, catalytic domain | 1 | Inherited |
| Group II chaperonin (CCT, TRIC), ATPase domain | 1 | Inherited |
| Group II chaperonin (CCT, TRIC), apical domain | 1 | Inherited |
| cAMP-binding domain | 1 | Inherited |
| Second domain of FERM | 1 | Inherited |
| Arrestin/Vps26-like | 1 | Inherited |
| Ubiquitin carboxyl-terminal hydrolase UCH-L | 1 | Inherited |
| Phoshoinositide 3-kinase (PI3K) helical domain | 1 | Inherited |
| Histone lysine methyltransferases | 1 | Inherited |
| Nuclear receptor | 1 | Inherited |
| Homeodomain | 1 | Inherited |
| Calponin-homology domain, CH-domain | 1 | Inherited |
| MIR domain | 1 | Inherited |
Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
 |
Plot tree as:
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Download Newick format tree:
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(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]
Supra-domain (including individual superfamily)
(show details)
Supra-domains annotated to this FA term (Not in SPFA)
Highlighted in gray are those with FDR>0.001
(show details)
Supra-domains annotated to this FA term (Not in SPFA)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
101912,103575
101912 - Sema domain
103575 - Plexin repeat | 1 | INHERITED FROM: larval abdomen || abdomen || segment || abdominal nerve || abdominal segmental nerve || abdominal segment || larval segment || larval tagma || larval abdominal segment || tagma |
49313,49313
49313 - Cadherin-like
49313 - Cadherin-like | 1 | INHERITED FROM: photoreceptor cell R4 || wing hair || outer photoreceptor cell |
47769,47769
47769 - SAM/Pointed domain
47769 - SAM/Pointed domain | 1 | INHERITED FROM: segment || tagma |
57903,47370
57903 - FYVE/PHD zinc finger
47370 - Bromodomain | 1 | INHERITED FROM: head || tagma |
46966,46966
46966 - Spectrin repeat
46966 - Spectrin repeat | 1 | INHERITED FROM: adult protocerebrum || adult labral segment |
52799,52799
52799 - (Phosphotyrosine protein) phosphatases II
52799 - (Phosphotyrosine protein) phosphatases II | 1 | INHERITED FROM: larval abdomen || abdominal nerve || abdominal segmental nerve || larval abdominal segment |
57196,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 1 | INHERITED FROM: interommatidial bristle || abdomen || adult thoracic sensillum || photoreceptor cell R7 || joint || leg || wing vein || mesothoracic bristle || adult mesothoracic sensillum || inner photoreceptor cell || wing blade dorsal compartment || scutum |
49417,81296
49417 - p53-like transcription factors
81296 - E set domains | 1 | INHERITED FROM: segment || adult thoracic segment || mesothoracic tergum || mesothoracic segment || adult external thorax || dorsal mesothorax || adult tagma || adult external mesothorax || adult thorax || adult mesothoracic segment || thorax || tergum || adult segment || thoracic segment || tagma |
57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 1 | INHERITED FROM: postalar bristle || segment || prescutum || adult thoracic segment || adult tagma || adult thorax || adult mesothoracic segment || thorax || adult segment || thoracic segment || tagma |
54236,47031
54236 - Ubiquitin-like
47031 - Second domain of FERM | 1 | INHERITED FROM: head capsule || adult head || head bristle || tagma |
52777,52777
52777 - CoA-dependent acyltransferases
52777 - CoA-dependent acyltransferases | 1 | INHERITED FROM: skeletal muscle of mesothorax || skeletal muscle of thorax || flight muscle |
49265,48726
49265 - Fibronectin type III
48726 - Immunoglobulin | 1 | INHERITED FROM: segment || adult thoracic segment || mesothoracic segment || adult tagma || adult thorax || adult mesothoracic segment || thorax || adult segment || thoracic segment || tagma |
48592,54849
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like | 1 | INHERITED FROM: adult tagma || tagma |
57903,57903
57903 - FYVE/PHD zinc finger
57903 - FYVE/PHD zinc finger | 1 | INHERITED FROM: tagma |
47220,47220
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like | 1 | INHERITED FROM: adult tagma || tagma |
49899,49899
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 1 | INHERITED FROM: segment || adult procephalic segment || photoreceptor cell R4 || procephalic segment || adult head || tagma |
48371,56112
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 1 | INHERITED FROM: segment || tagma |
54849,52029
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 1 | INHERITED FROM: adult tagma || tagma |
47459,55785
47459 - HLH, helix-loop-helix DNA-binding domain
55785 - PYP-like sensor domain (PAS domain) | 1 | INHERITED FROM: tagma |
49265,49265
49265 - Fibronectin type III
49265 - Fibronectin type III | 1 | INHERITED FROM: larval abdomen || lamina || abdominal neuron |
47459,158457
47459 - HLH, helix-loop-helix DNA-binding domain
158457 - Orange domain-like | 1 | INHERITED FROM: nervous system of embryonic/larval thorax || segment || 5-6I of thorax || thoracic neuron || tagma |
55550,50044
55550 - SH2 domain
50044 - SH3-domain | 1 | INHERITED FROM: head || segment || photoreceptor cell R7 || adult tagma || adult head || inner photoreceptor cell || adult segment || tagma |
54928,54928
54928 - RNA-binding domain, RBD
54928 - RNA-binding domain, RBD | 1 | INHERITED FROM: bristle of mesothoracic tergum || wing disc posterior compartment || dorsal thoracic disc posterior compartment |
48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin | 1 | INHERITED FROM: larval abdomen || LNv neuron || adult brain || adult cerebral ganglion || head segment || procephalic segment || LN period neuron || s-LNv neuron || lobe system of adult mushroom body || adult head segment |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 1 | INHERITED FROM: eye photoreceptor cell stalk || intersegmental nerve branch ISNb of A1-7 || ocellus || joint || frons || postfrons || tertiary pigment cell || secondary pigment cell || wing blade dorsal compartment |
50044,55550
50044 - SH3-domain
55550 - SH2 domain | 1 | INHERITED FROM: head || adult optic lobe || segment || adult tagma || adult head || adult segment || tagma |
49562,48371
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat | 1 | INHERITED FROM: segment || tagma |
81296,81296
81296 - E set domains
81296 - E set domains | 1 | INHERITED FROM: abdominal intersegmental nerve || abdominal nerve || abdominal segmental nerve |
47413,46689
47413 - lambda repressor-like DNA-binding domains
46689 - Homeodomain-like | 1 | INHERITED FROM: antennal segment || larval abdomen || adult antennal segment || head || adult cerebrum || segment || adult procephalic segment || adult central brain || adult brain || antennal lobe glomerulus VA1v || adult cerebral ganglion || procephalic segment || adult tagma || larval abdominal segment A1-7 || deutocerebrum || larval abdominal segment A2-7 || adult deutocerebrum || antennal sense organ || adult segment || tagma || adult antennal lobe glomerulus |
51045,51045
51045 - WW domain
51045 - WW domain | 1 | INHERITED FROM: interommatidial bristle || mesothoracic tergum || adult tagma || tagma |
47031,50729
47031 - Second domain of FERM
50729 - PH domain-like | 1 | INHERITED FROM: adult head || tagma |
57716,48508
57716 - Glucocorticoid receptor-like (DNA-binding domain)
48508 - Nuclear receptor ligand-binding domain | 1 | INHERITED FROM: segment || tagma |
48726,49265
48726 - Immunoglobulin
49265 - Fibronectin type III | 1 | INHERITED FROM: LNv neuron || LN period neuron || adult antennal lobe || s-LNv neuron || lobe system of adult mushroom body || adult antennal lobe glomerulus |
51206,51206
51206 - cAMP-binding domain-like
51206 - cAMP-binding domain-like | 1 | INHERITED FROM: segment || tagma |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
101912,103575
101912 - Sema domain
103575 - Plexin repeat | 1 | Inherited |
49313,49313
49313 - Cadherin-like
49313 - Cadherin-like | 1 | Inherited |
47769,47769
47769 - SAM/Pointed domain
47769 - SAM/Pointed domain | 1 | Inherited |
57903,47370
57903 - FYVE/PHD zinc finger
47370 - Bromodomain | 1 | Inherited |
46966,46966
46966 - Spectrin repeat
46966 - Spectrin repeat | 1 | Inherited |
52799,52799
52799 - (Phosphotyrosine protein) phosphatases II
52799 - (Phosphotyrosine protein) phosphatases II | 1 | Inherited |
57196,57184
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 1 | Inherited |
49417,81296
49417 - p53-like transcription factors
81296 - E set domains | 1 | Inherited |
57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 1 | Inherited |
54236,47031
54236 - Ubiquitin-like
47031 - Second domain of FERM | 1 | Inherited |
52777,52777
52777 - CoA-dependent acyltransferases
52777 - CoA-dependent acyltransferases | 1 | Inherited |
49265,48726
49265 - Fibronectin type III
48726 - Immunoglobulin | 1 | Inherited |
48592,54849
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like | 1 | Inherited |
57903,57903
57903 - FYVE/PHD zinc finger
57903 - FYVE/PHD zinc finger | 1 | Inherited |
47220,47220
47220 - alpha-catenin/vinculin-like
47220 - alpha-catenin/vinculin-like | 1 | Inherited |
49899,49899
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 1 | Inherited |
48371,56112
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 1 | Inherited |
54849,52029
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 1 | Inherited |
47459,55785
47459 - HLH, helix-loop-helix DNA-binding domain
55785 - PYP-like sensor domain (PAS domain) | 1 | Inherited |
49265,49265
49265 - Fibronectin type III
49265 - Fibronectin type III | 1 | Inherited |
47459,158457
47459 - HLH, helix-loop-helix DNA-binding domain
158457 - Orange domain-like | 1 | Inherited |
55550,50044
55550 - SH2 domain
50044 - SH3-domain | 1 | Inherited |
54928,54928
54928 - RNA-binding domain, RBD
54928 - RNA-binding domain, RBD | 1 | Inherited |
48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin | 1 | Inherited |
57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin | 1 | Inherited |
50044,55550
50044 - SH3-domain
55550 - SH2 domain | 1 | Inherited |
49562,48371
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat | 1 | Inherited |
81296,81296
81296 - E set domains
81296 - E set domains | 1 | Inherited |
47413,46689
47413 - lambda repressor-like DNA-binding domains
46689 - Homeodomain-like | 1 | Inherited |
51045,51045
51045 - WW domain
51045 - WW domain | 1 | Inherited |
47031,50729
47031 - Second domain of FERM
50729 - PH domain-like | 1 | Inherited |
57716,48508
57716 - Glucocorticoid receptor-like (DNA-binding domain)
48508 - Nuclear receptor ligand-binding domain | 1 | Inherited |
48726,49265
48726 - Immunoglobulin
49265 - Fibronectin type III | 1 | Inherited |
51206,51206
51206 - cAMP-binding domain-like
51206 - cAMP-binding domain-like | 1 | Inherited |
(show details)
Supra-domains annotated to this FA term (Not in SPFA)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49265,48726,48726
49265 - Fibronectin type III
48726 - Immunoglobulin
48726 - Immunoglobulin | 1 | INHERITED FROM: segment || adult thoracic segment || mesothoracic segment || adult tagma || adult thorax || adult mesothoracic segment || thorax || adult segment || thoracic segment || tagma |
49562,48371,56112
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 1 | INHERITED FROM: segment || tagma |
48726,48726,49265
48726 - Immunoglobulin
48726 - Immunoglobulin
49265 - Fibronectin type III | 1 | INHERITED FROM: LNv neuron || LN period neuron || adult antennal lobe || s-LNv neuron || lobe system of adult mushroom body || adult antennal lobe glomerulus |
57196,49899,49899
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 1 | INHERITED FROM: head || eye photoreceptor cell || ommatidium || adult head sensillum || segment || adult thoracic segment || mesothoracic segment || adult external thorax || head sensillum || wing || adult tagma || eye || adult head || adult thorax || adult mesothoracic segment || thorax || retina || wing blade || larval segment || larval tagma || outer photoreceptor cell || adult segment || thoracic segment || tagma |
49313,49313,49313
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like | 1 | INHERITED FROM: photoreceptor cell R4 || wing hair || outer photoreceptor cell |
57196,57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin | 1 | INHERITED FROM: ocellar triangle || eye photoreceptor cell stalk || adult external head || adult head sensillum || ocellus || joint || frons || postfrons || tertiary pigment cell || photoreceptor cell R1 || photoreceptor cell R6 || abdominal segment || secondary pigment cell || larval segment || larval tagma || wing blade dorsal compartment |
48726,48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin | 1 | INHERITED FROM: LNv neuron || adult brain || head segment || procephalic segment || s-LNv neuron || lobe system of adult mushroom body |
48592,54849,52029
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 1 | INHERITED FROM: adult tagma || tagma |
57667,57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 1 | INHERITED FROM: segment || adult tagma || adult thorax || thorax || adult segment || thoracic segment || tagma |
57196,57196,57184
57196 - EGF/Laminin
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 1 | INHERITED FROM: adult thoracic mechanosensory chaeta || mesothoracic tergum || dorsal mesothorax || bristle of mesothoracic tergum || adult external mesothorax || tergum || scutum || tagma |
81296,81296,81296
81296 - E set domains
81296 - E set domains
81296 - E set domains | 1 | INHERITED FROM: larval abdomen || abdominal intersegmental nerve || abdominal nerve || abdominal segmental nerve || larval abdominal segment || tagma |
54236,47031,50729
54236 - Ubiquitin-like
47031 - Second domain of FERM
50729 - PH domain-like | 1 | INHERITED FROM: head bristle || tagma |
49899,49899,49899
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 1 | INHERITED FROM: head || segment || adult tagma || adult head || adult segment || tagma |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
49265,48726,48726
49265 - Fibronectin type III
48726 - Immunoglobulin
48726 - Immunoglobulin | 1 | Inherited |
49562,48371,56112
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
48371 - ARM repeat
56112 - Protein kinase-like (PK-like) | 1 | Inherited |
48726,48726,49265
48726 - Immunoglobulin
48726 - Immunoglobulin
49265 - Fibronectin type III | 1 | Inherited |
57196,49899,49899
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 1 | Inherited |
49313,49313,49313
49313 - Cadherin-like
49313 - Cadherin-like
49313 - Cadherin-like | 1 | Inherited |
57196,57196,57196
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin | 1 | Inherited |
48726,48726,48726
48726 - Immunoglobulin
48726 - Immunoglobulin
48726 - Immunoglobulin | 1 | Inherited |
48592,54849,52029
48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like | 1 | Inherited |
57667,57667,57667
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers
57667 - beta-beta-alpha zinc fingers | 1 | Inherited |
57196,57196,57184
57196 - EGF/Laminin
57196 - EGF/Laminin
57184 - Growth factor receptor domain | 1 | Inherited |
81296,81296,81296
81296 - E set domains
81296 - E set domains
81296 - E set domains | 1 | Inherited |
54236,47031,50729
54236 - Ubiquitin-like
47031 - Second domain of FERM
50729 - PH domain-like | 1 | Inherited |
49899,49899,49899
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases | 1 | Inherited |
Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
|
Plot tree as:
| |
Download Newick format tree:
|
(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|
