SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Vasculitis

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Phenotypic abnormality [HP:0000118] <25>
+ + + 3:   Abnormality of the cardiovascular system [HP:0001626] <5>(60|88) (73|43|30)
+ + 2:   Abnormality of cardiovascular system morphology [HP:0030680] <3>(29|42) (31|19|20)
+ + 2:   Abnormality of the vasculature [HP:0002597] <13>(35|56) (45|27|18)
+ 1:   Abnormal vascular morphology [HP:0025015] <12>(15|18) (16|11|10)
0:   Vasculitis [HP:0002633] <6>(4|3) (4|2|0)
- 1:   Vasculitis in the skin [HP:0200029] <1>(0|0) (0|0|0)
- 1:   Cerebral vasculitis [HP:0005318](0|0) (0|0|0)
- 1:   Inflammatory arteriopathy [HP:0005291](0|0) (0|0|0)
- 1:   Large vessel vasculitis [HP:0005310](0|0) (0|0|0)
- 1:   Nodular inflammatory vasculitis [HP:0005300](0|0) (0|0|0)
- 1:   Small vessel vasculitis [HP:0011944](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DEATH domain0.00000006331Direct
TNF receptor-like0.00004564Direct
RNI-like0.0001788Direct
MHC antigen-recognition domain0.0005221Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DEATH domain, DD0.00009477Direct
MHC antigen-recognition domain0.0002636Direct
C1 set domains (antibody constant domain-like)0.0006777Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
DEATH domain0.00000002446Direct
TNF receptor-like0.00002035Direct
RNI-like0.00008485Direct
MHC antigen-recognition domain0.0002642Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57586,57586
  • 57586 - TNF receptor-like
  • 57586 - TNF receptor-like
  • 0.000177Direct
    54452,48726
  • 54452 - MHC antigen-recognition domain
  • 48726 - Immunoglobulin
  • 0.0002642Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)