SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Reduced visual acuity

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Phenotypic abnormality [HP:0000118] <25>
+ + + + 4:   Abnormality of the eye [HP:0000478] <2>(64|78) (69|38|28)
+ + + 3:   Abnormal eye physiology [HP:0012373] <17>(34|47) (37|22|20)
+ + 2:   Abnormality of vision [HP:0000504] <15>(4|16) (9|8|8)
+ 1:   Visual impairment [HP:0000505] <4>(0|8) (3|6|7)
0:   Reduced visual acuity [HP:0007663] <9>(0|3) (1|2|1)
- 1:   Visual acuity test abnormality [HP:0030532] <6>(0|0) (0|0|0)
- 1:   Ultra-low vision [HP:0032123] <4>(0|0) (0|0|0)
- 1:   Blindness [HP:0000618] <1>(0|1) (0|0|0)
- 1:   Amblyopia [HP:0000646](0|0) (0|0|0)
- 1:   Mildly reduced visual acuity [HP:0032037](0|0) (0|0|0)
- 1:   Moderately reduced visual acuity [HP:0030515](0|1) (0|0|0)
- 1:   Severely reduced visual acuity [HP:0001141](0|0) (0|0|0)
- 1:   Sudden loss of visual acuity [HP:0001117](0|0) (0|0|0)
- 1:   Very low visual acuity [HP:0032122](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
IF2B-like0Direct
GAF domain0.0006915Direct
G proteins0.5125Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GAF domain-like0.0007178Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55781,109604
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.0007178Direct
    55781,55781
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 0.0007178Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    55781,55781,109604
  • 55781 - GAF domain-like
  • 55781 - GAF domain-like
  • 109604 - HD-domain/PDEase-like
  • 0.0007178Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)