SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Recurrent aphthous stomatitis

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Abnormality of head or neck [HP:0000152] <2>(86|104) (97|58|38)
+ + + + + + + 7:   Abnormality of the head [HP:0000234] <6>(85|102) (96|57|38)
+ + + + + + 6:   Phenotypic abnormality [HP:0000118] <25>
+ + + + + + 6:   Abnormality of the face [HP:0000271] <14>(70|85) (82|46|31)
+ + + + + 5:   Abnormality of the immune system [HP:0002715] <3>(38|52) (40|29|16)
+ + + + + 5:   Abnormality of the mouth [HP:0000153] <2>(37|57) (46|32|22)
+ + + + 4:   Abnormality of immune system physiology [HP:0010978] <14>(29|37) (31|22|11)
+ + + + 4:   Abnormal oral morphology [HP:0031816] <6>(35|53) (44|30|21)
+ + + 3:   Abnormal oral cavity morphology [HP:0000163] <14>(28|43) (36|21|15)
+ + + 3:   Abnormal inflammatory response [HP:0012647] <2>(17|20) (18|11|3)
+ + 2:   Abnormal oral mucosa morphology [HP:0011830] <15>(10|16) (13|8|3)
+ + 2:   Increased inflammatory response [HP:0012649] <27>(15|18) (16|9|3)
+ 1:   Aphthous ulcer [HP:0032154] <1>(4|4) (4|2|0)
+ 1:   Stomatitis [HP:0010280] <1>(6|7) (6|5|2)
0:   Recurrent aphthous stomatitis [HP:0011107](4|4) (4|2|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RNI-like0.0000005167Direct
DEATH domain0.000001537Direct
MHC antigen-recognition domain0.00009758Direct
4-helical cytokines0.0001391Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
28-residue LRR0.0000006675Direct
Pyrin domain, PYD0.000001229Direct
MHC antigen-recognition domain0.00006268Direct
C1 set domains (antibody constant domain-like)0.0001688Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RNI-like0.0000002033Direct
DEATH domain0.0000006161Direct
MHC antigen-recognition domain0.00004496Direct
4-helical cytokines0.00006507Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47986,52540
  • 47986 - DEATH domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000008328Direct
    54452,48726
  • 54452 - MHC antigen-recognition domain
  • 48726 - Immunoglobulin
  • 0.00004496Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)