Mammalian Phenotype (MP): decreased retinal photoreceptor cell number

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children)	MP term [MP ID] <#Children>	(#SF|#FA)	#Supra-domain (Single|Duplex|Triple)
+ + + + + + + + + 9:	vision/eye phenotype [MP:0005391] <2>	(43|53)	(50|27|17)
+ + + + + + + + 8:	abnormal eye morphology [MP:0002092] <23>	(39|49)	(46|25|15)
+ + + + + + + 7:	abnormal posterior eye segment morphology [MP:0005195] <4>	(21|24)	(23|14|8)
+ + + + + + + 7:	mammalian phenotype [MP:0000001] <29>
+ + + + + + 6:	abnormal ocular fundus morphology [MP:0002864] <2>	(19|23)	(21|14|8)
+ + + + + 5:	nervous system phenotype [MP:0003631] <2>	(98|128)	(113|79|50)
+ + + + + 5:	abnormal retina morphology [MP:0001325] <23>	(19|23)	(21|14|8)
+ + + + 4:	abnormal retinal layer morphology [MP:0003727] <3>	(11|16)	(12|8|6)
+ + + + 4:	abnormal somatic nervous system morphology [MP:0002752] <7>	(34|47)	(37|25|14)
+ + + + 4:	abnormal nervous system morphology [MP:0003632] <17>	(76|104)	(91|64|47)
+ + + 3:	abnormal neuron morphology [MP:0002882] <29>	(36|59)	(40|26|19)
+ + + 3:	abnormal somatic sensory system morphology [MP:0000959] <4>	(26|38)	(29|19|12)
+ + + 3:	abnormal retinal neuronal layer morphology [MP:0006069] <7>	(11|15)	(11|8|5)
+ + + 3:	abnormal neuron number [MP:0008946] <3>	(8|16)	(9|9|8)
+ + 2:	abnormal sensory neuron morphology [MP:0000965] <16>	(16|28)	(19|14|9)
+ + 2:	abnormal retinal photoreceptor layer morphology [MP:0003728] <1>	(4|7)	(5|3|2)
+ + 2:	decreased neuron number [MP:0008948] <8>	(6|11)	(6|5|4)
+ 1:	decreased sensory neuron number [MP:0000966] <6>	(5|8)	(5|3|2)
+ 1:	abnormal retinal photoreceptor morphology [MP:0001004] <8>	(4|7)	(5|3|2)
0:	decreased retinal photoreceptor cell number [MP:0001327] <2>	(2|4)	(3|2|1)
- 1:	decreased retinal cone cell number [MP:0008446] <1>	(0|0)	(0|0|0)
- 1:	decreased retinal rod cell number [MP:0008453] <1>	(0|0)	(0|0|0)

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Superfamily

Superfamily domains annotated to this MP term (Not in SDMP)
Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
GAF domain-like	0.000003515	DIRECT
HD-domain/PDEase-like	0.0004035	DIRECT

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Family

Family domains annotated to this MP term (SDMP level: Highly Informative)
Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
Retinoblastoma tumor suppressor domains	0	DIRECT
GAF domain	0.000002457	DIRECT
PDEase	0.0002068	DIRECT
cAMP-binding domain	0.0009046	DIRECT

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Supra-domain (including individual superfamily)

Supra-domains annotated to this MP term (Not in SPMP)
Highlighted in gray are those with FDR>0.001

Supra-domain (Single)	FDR (all)	Annotation (direct or inherited)
GAF domain-like	0.000001497	DIRECT
HD-domain/PDEase-like	0.000211	DIRECT
Cyclin-like	0.0006331	DIRECT

Supra-domains annotated to this MP term (Not in SPMP)
Highlighted in gray are those with FDR>0.001

Supra-domain (Duplex) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
55781,55781 55781 - GAF domain-like 55781 - GAF domain-like	0.000001497	DIRECT
55781,109604 55781 - GAF domain-like 109604 - HD-domain/PDEase-like	0.000001497	DIRECT

Supra-domains annotated to this MP term (Not in SPMP)
Highlighted in gray are those with FDR>0.001

Supra-domain (Triple) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
55781,55781,109604 55781 - GAF domain-like 55781 - GAF domain-like 109604 - HD-domain/PDEase-like	0.000001497	DIRECT