SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Mammalian Phenotype (MP): absence seizures

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term (+ for parents, - for children) MP term [MP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   mammalian phenotype [MP:0000001] <29>
+ + + + 4:   nervous system phenotype [MP:0003631] <2>(98|128) (113|79|50)
+ + + + 4:   behavior/neurological phenotype [MP:0005386] <1>(38|61) (42|40|24)
+ + + 3:   abnormal nervous system physiology [MP:0003633] <38>(43|60) (52|31|18)
+ + + 3:   abnormal behavior [MP:0004924] <19>(37|56) (41|37|22)
+ + 2:   seizures [MP:0002064] <6>(10|15) (13|3|0)
+ 1:   nonconvulsive seizures [MP:0000948] <1>(4|3) (5|1|0)
0:   absence seizures [MP:0003216] <1>(4|3) (5|1|0)
- 1:   abnormal spike wave discharge [MP:0008840] <4>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Voltage-gated potassium channels0.00000003176Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00001885Direct
Nicotinic receptor ligand binding domain-like0.00001885Direct
Periplasmic binding protein-like I0.0006753Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0.000008388Direct
Neurotransmitter-gated ion-channel transmembrane pore0.000008388Direct
Leucine zipper domain0.0005841Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Voltage-gated potassium channels0.00000001221Direct
Neurotransmitter-gated ion-channel transmembrane pore0.000008421Direct
Nicotinic receptor ligand binding domain-like0.000008421Direct
Periplasmic binding protein-like I0.0003613Direct
Leucine zipper domain0.0006022Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.000008421Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)