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Worm Phenotype (WP): cell stress response variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   organism environmental stimulus response variant [WBPhenotype:0000738] <15>(138|128) (139|57|18)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ 1:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(60|54) (60|23|12)
+ 1:   organism stress response variant [WBPhenotype:0000067] <20>(75|63) (76|26|7)
0:   cell stress response variant [WBPhenotype:0000142] <12>(20|17) (20|7|3)
- 1:   DNA damage response variant [WBPhenotype:0000739] <4>(0|0) (0|0|0)
- 1:   cell UV response variant [WBPhenotype:0000100] <4>(0|0) (0|0|0)
- 1:   cell ionizing radiation response variant [WBPhenotype:0001324] <4>(9|5) (9|0|0)
- 1:   DNA damage checkpoint variant [WBPhenotype:0000741] <3>(0|0) (0|0|0)
- 1:   cellular oxidative stress response variant [WBPhenotype:0000068] <1>(0|0) (0|0|0)
- 1:   ER stress response variant [WBPhenotype:0001485](0|0) (0|0|0)
- 1:   cellular osmotic stress response variant [WBPhenotype:0001725](4|4) (4|3|1)
- 1:   mitochondrial stress response variant [WBPhenotype:0002434](0|0) (0|0|0)
- 1:   pathogen induced cell death increased [WBPhenotype:0000144](0|0) (0|0|0)
- 1:   response to injury variant [WBPhenotype:0001840](4|3) (4|1|0)
- 1:   unfolded protein accumulation [WBPhenotype:0001486](0|0) (0|0|0)
- 1:   unfolded protein response variant [WBPhenotype:0001719](6|5) (6|4|2)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex, superhelical domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000000005381Direct
PLC-like phosphodiesterases0.0000002481Direct
RING/U-box0.0000003666Direct
Di-copper centre-containing domain0.0000008783Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00004616Direct
GroEL-intermediate domain like0.0003715Direct
GroEL equatorial domain-like0.0003715Direct
GroEL apical domain-like0.0003715Direct
Sm-like ribonucleoproteins0.001775Inherited
Hect, E3 ligase catalytic domain0.008066Inherited
PLP-dependent transferases0.02818Inherited
PH domain-like0.08282Inherited
Saposin0.09039Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.09373Inherited
EF-hand0.09743Inherited
Cysteine-rich domain0.191Inherited
Metallo-dependent phosphatases0.3056Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Lipovitellin-phosvitin complex, superhelical domain0Direct
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
RNA-polymerase beta0Direct
Mammalian PLC0Direct
Arginine methyltransferase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.000005367Direct
Hemocyanin middle domain0.000005367Direct
PLC-like (P variant)0.000008696Direct
EF-hand modules in multidomain proteins0.00002519Direct
Tandem AAA-ATPase domain0.0000476Direct
Pleckstrin-homology domain (PH domain)0.0003092Direct
Group II chaperonin (CCT, TRIC), apical domain0.001208Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.001208Inherited
Hect, E3 ligase catalytic domain0.005825Inherited
RING finger domain, C3HC40.03101Inherited
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.07499Inherited
G proteins0.563Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Lipovitellin-phosvitin complex; beta-sheet shell regions0Direct
RBP11-like subunits of RNA polymerase0Direct
Lipovitellin-phosvitin complex, superhelical domain0Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.000000004285Direct
PLC-like phosphodiesterases0.0000001995Direct
RING/U-box0.0000002951Direct
Di-copper centre-containing domain0.0000007093Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00003774Direct
GroEL equatorial domain-like0.0003063Direct
GroEL apical domain-like0.0003063Direct
GroEL-intermediate domain like0.0003063Direct
Sm-like ribonucleoproteins0.001486Inherited
Hect, E3 ligase catalytic domain0.006904Inherited
PLP-dependent transferases0.02471Inherited
PH domain-like0.07438Inherited
Saposin0.08135Inherited
S-adenosyl-L-methionine-dependent methyltransferases0.08447Inherited
EF-hand0.08792Inherited
Cysteine-rich domain0.1757Inherited
Metallo-dependent phosphatases0.2864Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0003063Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0003063Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0003063Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)