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Worm Phenotype (WP): meiotic progression prophase variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + 3:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + 3:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)
+ + 2:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ + 2:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + 2:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + 2:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
+ 1:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
+ 1:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
0:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
- 1:   diplotene progression during oogenesis variant [WBPhenotype:0001947] <2>(11|13) (11|5|1)
- 1:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
- 1:   diakinesis progression during oogenesis variant [WBPhenotype:0001948] <1>(2|4) (2|2|0)
- 1:   homolog association variant [WBPhenotype:0001963](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.00000000002982Direct
GroEL equatorial domain-like0.00000000002982Direct
GroEL apical domain-like0.0000000001438Direct
Translation proteins SH3-like domain0.00000007171Direct
Class II aaRS and biotin synthetases0.000005207Direct
L30e-like0.0000111Direct
F1F0 ATP synthase subunit C0.00001522Direct
Ribosomal proteins S24e, L23 and L15e0.00001522Direct
S15/NS1 RNA-binding domain0.00001522Direct
Translation proteins0.00002701Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003733Direct
Translational machinery components0.00004323Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003135Direct
Sm-like ribonucleoproteins0.008565Inherited
Ribosomal protein S5 domain 2-like0.03122Inherited
Nucleotidylyl transferase0.05905Inherited
SNARE-like0.1104Inherited
POZ domain0.1767Inherited
Nucleic acid-binding proteins0.1855Inherited
Histone-fold1Inherited
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000001355Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000001171Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000461Direct
Anticodon-binding domain0.000005528Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000006892Direct
Translational machinery components0.00001068Direct
L30e/L7ae ribosomal proteins0.00002594Direct
F1F0 ATP synthase subunit C0.00002594Direct
Cold shock DNA-binding domain-like0.00004302Direct
Elongation factors0.00009569Direct
Clathrin adaptor core protein0.0001623Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.000527Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0008356Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.00103Inherited
Nitrogenase iron protein-like0.001251Inherited
BTB/POZ domain0.06172Inherited
RecA protein-like (ATPase-domain)0.06172Inherited
Nucleosome core histones1Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0.00000000002356Direct
GroEL-intermediate domain like0.00000000002356Direct
GroEL apical domain-like0.0000000001139Direct
Translation proteins SH3-like domain0.00000005742Direct
Class II aaRS and biotin synthetases0.000004235Direct
L30e-like0.000009033Direct
F1F0 ATP synthase subunit C0.0000124Direct
Ribosomal proteins S24e, L23 and L15e0.0000124Direct
S15/NS1 RNA-binding domain0.0000124Direct
Translation proteins0.00002205Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003049Direct
Translational machinery components0.00003533Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0002582Direct
Sm-like ribonucleoproteins0.007344Inherited
Ribosomal protein S5 domain 2-like0.02743Inherited
Nucleotidylyl transferase0.05254Inherited
SNARE-like0.09992Inherited
POZ domain0.1622Inherited
Nucleic acid-binding proteins0.1705Inherited
Protein kinase-like (PK-like)1Inherited
Histone-fold1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000000002356Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002356Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002634Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0000124Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00002227Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00007869Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002582Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.09992Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.09992Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002356Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002582Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)