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Worm Phenotype (WP): cell component localization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <2>
+ + 2:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ 1:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
0:   cell component localization variant [WBPhenotype:0002098] <8>(22|24) (23|12|3)
- 1:   endosome localization variant [WBPhenotype:0002100] <3>(9|10) (9|4|1)
- 1:   mitochondria spacing variant [WBPhenotype:0001576] <1>(13|14) (14|8|2)
- 1:   endoplasmic reticulum localization variant [WBPhenotype:0002101](0|0) (0|0|0)
- 1:   golgi apparatus localization variant [WBPhenotype:0002102](0|0) (0|0|0)
- 1:   lysosome localization variant [WBPhenotype:0002103](0|0) (0|0|0)
- 1:   lysosome-related organelle localization variant [WBPhenotype:0002099](0|0) (0|0|0)
- 1:   mitochondria localization variant [WBPhenotype:0002379](0|0) (0|0|0)
- 1:   ribosome localization variant [WBPhenotype:0002477](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
SH2 domain0.00000001605Direct
F1F0 ATP synthase subunit C0.00001766Direct
SH3-domain0.00002954Direct
Second domain of FERM0.00006931Direct
PH domain-like0.0004331Direct
Tubulin C-terminal domain-like0.0009951Direct
GroEL-intermediate domain like0.003052Inherited
GroEL equatorial domain-like0.003052Inherited
Tubulin nucleotide-binding domain-like0.003445Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.006103Inherited
GroEL apical domain-like0.006194Inherited
Actin-like ATPase domain0.0086Inherited
DBL homology domain (DH-domain)0.01114Inherited
Sm-like ribonucleoproteins0.02806Inherited
Spectrin repeat0.03784Inherited
Cysteine-rich domain0.04073Inherited
Calponin-homology domain, CH-domain0.05756Inherited
(Phosphotyrosine protein) phosphatases II0.06408Inherited
Protein kinase-like (PK-like)0.1671Inherited
GTPase activation domain, GAP0.1781Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.2783Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
SH2 domain0.00000008929Direct
F1F0 ATP synthase subunit C0.00003212Direct
SH3-domain0.00004599Direct
Second domain of FERM0.00007343Direct
Third domain of FERM0.0003922Direct
Tubulin, C-terminal domain0.001149Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.001333Inherited
LIM domain0.001333Inherited
Proteasome subunits0.001949Inherited
First domain of FERM0.002067Inherited
Group II chaperonin (CCT, TRIC), apical domain0.003262Inherited
Tubulin, GTPase domain0.003836Inherited
Actin/HSP700.003879Inherited
RecA protein-like (ATPase-domain)0.008241Inherited
DBL homology domain (DH-domain)0.01161Inherited
Pleckstrin-homology domain (PH domain)0.01234Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.03552Inherited
Spectrin repeat0.03864Inherited
Calponin-homology domain, CH-domain0.06443Inherited
BCR-homology GTPase activation domain (BH-domain)0.1701Inherited
Protein kinases, catalytic subunit0.2203Inherited
I set domains0.3204Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
SH2 domain0.0000000128Direct
F1F0 ATP synthase subunit C0.00001439Direct
SH3-domain0.00002411Direct
Second domain of FERM0.00005669Direct
PH domain-like0.0003578Direct
Tubulin C-terminal domain-like0.0008283Direct
GroEL equatorial domain-like0.002577Inherited
GroEL-intermediate domain like0.002577Inherited
Tubulin nucleotide-binding domain-like0.002914Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.005198Inherited
GroEL apical domain-like0.005277Inherited
Actin-like ATPase domain0.007373Inherited
DBL homology domain (DH-domain)0.009598Inherited
Sm-like ribonucleoproteins0.0246Inherited
Spectrin repeat0.03336Inherited
Cysteine-rich domain0.03591Inherited
Calponin-homology domain, CH-domain0.05119Inherited
(Phosphotyrosine protein) phosphatases II0.05713Inherited
Protein kinase-like (PK-like)0.153Inherited
GTPase activation domain, GAP0.1636Inherited
Fibronectin type III0.2257Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.2598Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000003061Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000003061Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00005669Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0002236Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0003202Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.001776Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.002577Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.002577Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.002914Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.007111Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.007373Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.01961Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00006437Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0003202Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.002577Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)