SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Worm Phenotype (WP): early larval arrest

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + + 5:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + 4:   organism development variant [WBPhenotype:0000531] <10>(505|583) (505|248|68)
+ + + + 4:   growth variant [WBPhenotype:0000030] <5>(202|266) (204|116|38)
+ + + 3:   postembryonic development variant [WBPhenotype:0000049] <4>(236|316) (237|134|34)
+ + + 3:   developmental growth variant [WBPhenotype:0001015] <3>(138|186) (138|81|26)
+ + 2:   larval development variant [WBPhenotype:0000750] <8>(161|217) (162|96|28)
+ + 2:   larval growth variant [WBPhenotype:0001016] <2>(138|186) (138|81|26)
+ 1:   larval arrest [WBPhenotype:0000059] <3>(138|186) (138|81|26)
0:   early larval arrest [WBPhenotype:0000055] <2>(10|8) (10|4|2)
- 1:   L1 arrest [WBPhenotype:0000081] <2>(2|2) (2|1|0)
- 1:   L2 arrest [WBPhenotype:0000082](1|0) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Ribosomal protein S5 domain 2-like0.0000001757Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000007938Direct
Ribonuclease PH domain 2-like0.0000009209Direct
POZ domain0.00000163Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003837Direct
WD40 repeat-like0.0005381Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.000608Direct
Translation proteins SH3-like domain0.000608Direct
Quinoprotein alcohol dehydrogenase-like0.004015Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RNA-polymerase beta-prime0Direct
Skp1 dimerisation domain-like0Direct
BTB/POZ domain0.000000000001726Direct
Ribonuclease PH domain 2-like0.000001784Direct
Ribonuclease PH domain 1-like0.000001784Direct
Translational machinery components0.0003586Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003586Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00097Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
Ribosomal protein S5 domain 2-like0.000000141Direct
beta and beta-prime subunits of DNA dependent RNA-polymerase0.0000006408Direct
Ribonuclease PH domain 2-like0.000000744Direct
POZ domain0.00000132Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0003165Direct
WD40 repeat-like0.0004455Direct
Translation proteins SH3-like domain0.0005037Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0005037Direct
Quinoprotein alcohol dehydrogenase-like0.003401Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    54211,55666
  • 54211 - Ribosomal protein S5 domain 2-like
  • 55666 - Ribonuclease PH domain 2-like
  • 0.000000744Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001841Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003165Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0001841Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0003165Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)