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Worm Phenotype (WP): pigmentation variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Variant [WBPhenotype:0000886] <2>
+ 1:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
0:   pigmentation variant [WBPhenotype:0000521] <4>(15|7) (15|5|2)
- 1:   organism pigmentation variant [WBPhenotype:0000527] <5>(14|7) (14|5|2)
- 1:   body region pigmentation variant [WBPhenotype:0000278] <2>(0|0) (0|0|0)
- 1:   organ system pigmentation variant [WBPhenotype:0000292] <1>(0|0) (0|0|0)
- 1:   cell pigmentation variant [WBPhenotype:0000526](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GroEL-intermediate domain like0.0000006067Direct
GroEL equatorial domain-like0.0000006067Direct
GroEL apical domain-like0.000001447Direct
Cyclin-like0.00001259Direct
ARM repeat0.00009454Direct
PreATP-grasp domain0.0005429Direct
Sm-like ribonucleoproteins0.001009Inherited
Glutathione synthetase ATP-binding domain-like0.002592Inherited
SNARE-like0.003362Inherited
Cysteine proteinases0.003535Inherited
Lipocalins0.00482Inherited
EGF/Laminin0.008346Inherited
ClpP/crotonase0.008507Inherited
DBL homology domain (DH-domain)0.008507Inherited
"Winged helix" DNA-binding domain0.01739Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), ATPase domain0.0000003726Direct
Group II chaperonin (CCT, TRIC), apical domain0.000001061Direct
Cyclin0.00001006Direct
Adenain-like0.00003256Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0002857Direct
Fatty acid binding protein-like0.002432Inherited
DBL homology domain (DH-domain)0.01129Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL equatorial domain-like0.0000004894Direct
GroEL-intermediate domain like0.0000004894Direct
GroEL apical domain-like0.00000117Direct
Cyclin-like0.00001025Direct
ARM repeat0.00007747Direct
PreATP-grasp domain0.0004496Direct
Sm-like ribonucleoproteins0.0008396Direct
Glutathione synthetase ATP-binding domain-like0.002183Inherited
SNARE-like0.002842Inherited
Cysteine proteinases0.002991Inherited
Lipocalins0.004093Inherited
EGF/Laminin0.007149Inherited
DBL homology domain (DH-domain)0.007292Inherited
ClpP/crotonase0.007292Inherited
"Winged helix" DNA-binding domain0.0151Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000004894Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000004894Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0000006308Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.001196Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.002118Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000004894Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.003701Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)