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Worm Phenotype (WP): RNAi response variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ 1:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
0:   RNAi response variant [WBPhenotype:0000743] <11>(8|10) (8|5|2)
- 1:   RNAi resistant [WBPhenotype:0001208] <2>(2|5) (2|2|2)
- 1:   RNAi enhanced [WBPhenotype:0001258](2|1) (2|0|0)
- 1:   RNAi persistence variant [WBPhenotype:0001828](0|0) (0|0|0)
- 1:   RNAi transport defective [WBPhenotype:0002374](0|0) (0|0|0)
- 1:   cytoplasmic RNAi defective [WBPhenotype:0001769](0|0) (0|0|0)
- 1:   endo siRNA binding variant [WBPhenotype:0001770](0|0) (0|0|0)
- 1:   endo siRNA production variant [WBPhenotype:0001771](0|0) (0|0|0)
- 1:   exo-RNAi response variant [WBPhenotype:0002150](0|0) (0|0|0)
- 1:   nuclear RNAi defective [WBPhenotype:0001778](0|0) (0|0|0)
- 1:   siRNA processing defective [WBPhenotype:0002145](0|0) (0|0|0)
- 1:   systemic RNAi variant [WBPhenotype:0000029](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
P-loop containing nucleoside triphosphate hydrolases0Direct
ABC transporter transmembrane region0Direct
Ribonuclease H-like0.00000000008595Direct
PAZ domain0.0000000002671Direct
PLC-like phosphodiesterases0.0000004772Direct
SET domain0.00001077Direct
ARM repeat0.0002022Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0009147Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
ABC transporter transmembrane region0Direct
ABC transporter ATPase domain-like0Direct
Mammalian PLC0.0000000005433Direct
PAZ domain0.000000008855Direct
Histone lysine methyltransferases0.00000009153Direct
PLC-like (P variant)0.000000217Direct
Armadillo repeat0.00001383Direct
Tandem AAA-ATPase domain0.0002329Direct
DnaQ-like 3'-5' exonuclease0.0006954Direct
PHD domain0.002059Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
P-loop containing nucleoside triphosphate hydrolases0Direct
ABC transporter transmembrane region0Direct
Ribonuclease H-like0.000000000068Direct
PAZ domain0.0000000002117Direct
PLC-like phosphodiesterases0.0000003844Direct
SET domain0.000008762Direct
ARM repeat0.000166Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.000761Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.000000000001071Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.0000005699Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.0000005699Direct
    101690,53098
  • 101690 - PAZ domain
  • 53098 - Ribonuclease H-like
  • 0.00001079Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.000000000001071Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.000000000001071Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)