SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Worm Phenotype (WP): axon development variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + 3:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + 2:   neuron development variant [WBPhenotype:0000816] <6>(29|28) (30|11|4)
+ 1:   neurite development variant [WBPhenotype:0000944] <5>(6|8) (6|4|3)
0:   axon development variant [WBPhenotype:0000880] <3>(3|4) (3|2|2)
- 1:   axon regeneration defective [WBPhenotype:0001911] <1>(1|0) (1|0|0)
- 1:   axon fasciculation variant [WBPhenotype:0000632](0|2) (0|1|1)
- 1:   axon regeneration enhanced [WBPhenotype:0002479](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Cadherin-like0.000002409Direct
Troponin coil-coiled subunits0.000004883Direct
Cysteine-rich domain0.001797Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Troponin I0.0000001094Direct
Cadherin0.000001105Direct
Motor proteins0.004186Inherited
I set domains0.2415Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cadherin-like0.000001953Direct
Troponin coil-coiled subunits0.000003969Direct
Cysteine-rich domain0.001504Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.00001756Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.1057Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.00001756Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.4085Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)