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Worm Phenotype (WP): nuclear appearance variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
0:   nuclear appearance variant [WBPhenotype:0001028] <7>(7|9) (7|4|0)
- 1:   chromosome morphology variant [WBPhenotype:0001348] <4>(0|0) (0|0|0)
- 1:   nuclear envelope organization variant [WBPhenotype:0002037] <4>(0|1) (0|0|0)
- 1:   nuclear morphology variation early emb [WBPhenotype:0001026] <1>(1|1) (1|1|0)
- 1:   nucleolus variant [WBPhenotype:0000722] <1>(0|1) (0|0|0)
- 1:   nuclear rotation variant [WBPhenotype:0000161](0|0) (0|0|0)
- 1:   nuclei enlarged [WBPhenotype:0001567](2|1) (2|1|0)
- 1:   nuclei small [WBPhenotype:0001792](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleic acid-binding proteins0.000008635Direct
F1F0 ATP synthase subunit C0.00002061Direct
Ribosomal protein S5 domain 2-like0.0003417Direct
Cyclin-like0.001229Inherited
L30e-like0.005016Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.04283Inherited
Nucleotidylyl transferase0.1221Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Translational machinery components0.00001413Direct
F1F0 ATP synthase subunit C0.00003256Direct
Cyclin0.00004984Direct
Elongation factors0.0002224Direct
Cold shock DNA-binding domain-like0.0003062Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.0009797Direct
Pumilio repeat0.003699Inherited
Ubiquitin-related0.01307Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.07086Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nucleic acid-binding proteins0.000007022Direct
F1F0 ATP synthase subunit C0.0000168Direct
Ribosomal protein S5 domain 2-like0.0002816Direct
Cyclin-like0.001025Inherited
L30e-like0.004262Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.03782Inherited
Nucleotidylyl transferase0.1108Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000003581Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.00004782Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0001058Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0002161Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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