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Worm Phenotype (WP): cell membrane organization biogenesis variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
0:   cell membrane organization biogenesis variant [WBPhenotype:0001982](8|9) (8|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.000005851Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001356Direct
GroEL-intermediate domain like0.0003961Direct
GroEL equatorial domain-like0.0003961Direct
GroEL apical domain-like0.0003961Direct
Translation proteins SH3-like domain0.0004384Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.000008344Direct
Clathrin adaptor core protein0.00005351Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002525Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0002525Direct
Proteasome subunits0.0007561Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0008665Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.000004759Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001112Direct
GroEL equatorial domain-like0.0003268Direct
GroEL apical domain-like0.0003268Direct
GroEL-intermediate domain like0.0003268Direct
Translation proteins SH3-like domain0.0003622Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000009995Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0003268Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0003268Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0003268Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)