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Worm Phenotype (WP): maintenance of gene silencing variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + 2:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ 1:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
0:   maintenance of gene silencing variant [WBPhenotype:0002063] <4>(11|8) (11|2|0)
- 1:   transgene silencing variant [WBPhenotype:0001593] <2>(4|3) (4|0|0)
- 1:   transposon silencing variant [WBPhenotype:0000745] <1>(0|0) (0|0|0)
- 1:   maintenance of gene silencing defective [WBPhenotype:0002064](0|0) (0|0|0)
- 1:   transgene induced cosuppression variant [WBPhenotype:0000744](2|0) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PAZ domain0.0000000007787Direct
Chromo domain-like0.00000007454Direct
Ribonuclease H-like0.00000008421Direct
dsRNA-binding domain-like0.0000001877Direct
HMG-box0.00002038Direct
RNA-binding domain, RBD0.00003138Direct
WW domain0.0002659Direct
PAP/OAS1 substrate-binding domain0.0003351Direct
SET domain0.0004144Direct
Nucleotidyltransferase0.0005354Direct
"Winged helix" DNA-binding domain0.009508Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Linker histone H1/H50.0000000005351Direct
PAZ domain0.00000001581Direct
Double-stranded RNA-binding domain (dsRBD)0.000000561Direct
Armadillo repeat0.000002933Direct
Chromo domain0.000004657Direct
HMG-box0.0000205Direct
WW domain0.0002693Direct
Histone lysine methyltransferases0.0002693Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PAZ domain0.0000000006182Direct
Chromo domain-like0.0000000597Direct
Ribonuclease H-like0.00000006746Direct
dsRNA-binding domain-like0.0000001507Direct
HMG-box0.00001661Direct
RNA-binding domain, RBD0.00002562Direct
WW domain0.0002189Direct
PAP/OAS1 substrate-binding domain0.0002762Direct
SET domain0.0003422Direct
Nucleotidyltransferase0.0004433Direct
"Winged helix" DNA-binding domain0.008166Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101690,53098
  • 101690 - PAZ domain
  • 53098 - Ribonuclease H-like
  • 0.000004039Direct
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.0001592Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)