Worm Phenotype (WP): recycling endosome morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children)	WP term [WP ID] <#Children>	(#SF|#FA)	#Supra-domain (Single|Duplex|Triple)
+ + + + + + + 7:	Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:	morphology variant [WBPhenotype:0000520] <5>	(443|528)	(444|229|63)
+ + + + + 5:	cell morphology variant [WBPhenotype:0000533] <10>	(104|103)	(106|55|17)
+ + + + 4:	cell component morphology variant [WBPhenotype:0002089] <17>	(84|85)	(84|42|9)
+ + + + 4:	physiology variant [WBPhenotype:0000519] <14>	(510|587)	(510|248|68)
+ + + 3:	vesicle organization variant [WBPhenotype:0001671] <2>	(15|13)	(15|5|1)
+ + 2:	vesicle morphology variant [WBPhenotype:0001323] <3>	(13|12)	(13|5|1)
+ 1:	endosome morphology variant [WBPhenotype:0002090] <3>	(12|11)	(12|5|1)
0:	recycling endosome morphology variant [WBPhenotype:0002093] <2>	(11|11)	(11|5|1)
- 1:	RAB-11 recycling endosome morphology variant [WBPhenotype:0002094]	(0|0)	(0|0|0)
- 1:	RME-1 recycling endosome morphology variant [WBPhenotype:0002110]	(0|0)	(0|0|0)

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Superfamily

Superfamily domains annotated to this WP term (Not in SDWP)
Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase	0	DIRECT
Histone-fold	0	DIRECT
N-terminal domain of alpha and beta subunits of F1 ATP synthase	0	DIRECT
GroEL-intermediate domain like	0.00000006652	DIRECT
GroEL equatorial domain-like	0.00000006652	DIRECT
GroEL apical domain-like	0.0000001607	DIRECT
N-terminal nucleophile aminohydrolases (Ntn hydrolases)	0.0000009825	DIRECT
Riboflavin synthase domain-like	0.000001704	DIRECT
Ferredoxin reductase-like, C-terminal NADP-linked domain	0.000001704	DIRECT
F1F0 ATP synthase subunit C	0.000006243	DIRECT
Sm-like ribonucleoproteins	0.00001101	DIRECT

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Family

Family domains annotated to this WP term (Not in SDWP)
Highlighted in gray are those with FDR_all>0.001

SCOP term	FDR (all)	Annotation (direct or inherited)
Nucleosome core histones	0	DIRECT
C-terminal domain of alpha and beta subunits of F1 ATP synthase	0	DIRECT
Group II chaperonin (CCT, TRIC), intermediate domain	0	DIRECT
N-terminal domain of alpha and beta subunits of F1 ATP synthase	0	DIRECT
Proteasome subunits	0.000000004341	DIRECT
Group II chaperonin (CCT, TRIC), ATPase domain	0.0000000499	DIRECT
Group II chaperonin (CCT, TRIC), apical domain	0.0000001444	DIRECT
RecA protein-like (ATPase-domain)	0.0000003614	DIRECT
Ferredoxin reductase FAD-binding domain-like	0.000002017	DIRECT
F1F0 ATP synthase subunit C	0.000009555	DIRECT
Sm motif of small nuclear ribonucleoproteins, SNRNP	0.00005901	DIRECT

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Supra-domain (including individual superfamily)

Supra-domains annotated to this WP term (Not in SPWP)
Highlighted in gray are those with FDR>0.001

Supra-domain (Single)	FDR (all)	Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase	0	DIRECT
C-terminal domain of alpha and beta subunits of F1 ATP synthase	0	DIRECT
Histone-fold	0	DIRECT
GroEL equatorial domain-like	0.00000005324	DIRECT
GroEL-intermediate domain like	0.00000005324	DIRECT
GroEL apical domain-like	0.0000001289	DIRECT
N-terminal nucleophile aminohydrolases (Ntn hydrolases)	0.0000007937	DIRECT
Ferredoxin reductase-like, C-terminal NADP-linked domain	0.000001379	DIRECT
Riboflavin synthase domain-like	0.000001379	DIRECT
F1F0 ATP synthase subunit C	0.000005075	DIRECT
Sm-like ribonucleoproteins	0.000008959	DIRECT

Supra-domains annotated to this WP term (Not in SPWP)
Highlighted in gray are those with FDR>0.001

Supra-domain (Duplex) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
52540,47917 52540 - P-loop containing nucleoside triphosphate hydrolases 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase	0	DIRECT
48592,54849 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like	0.00000005324	DIRECT
54849,52029 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like	0.00000005324	DIRECT
63380,52343 63380 - Riboflavin synthase domain-like 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain	0.0000001587	DIRECT
81333,81333 81333 - F1F0 ATP synthase subunit C 81333 - F1F0 ATP synthase subunit C	0.000001067	DIRECT

Supra-domains annotated to this WP term (Not in SPWP)
Highlighted in gray are those with FDR>0.001

Supra-domain (Triple) in N- to C-terminal order	FDR (all)	Annotation (direct or inherited)
48592,54849,52029 48592 - GroEL equatorial domain-like 54849 - GroEL-intermediate domain like 52029 - GroEL apical domain-like	0.00000005324	DIRECT